Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC21.57■■□□□ 1.04
COL3A1P02461 AC002472.2-201ENST00000442739 958 ntBASIC21.57■■□□□ 1.04
COL3A1P02461 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC21.57■■□□□ 1.04
COL3A1P02461 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC21.57■■□□□ 1.04
COL3A1P02461 MIR3197-201ENST00000582241 73 ntBASIC21.57■■□□□ 1.04
COL3A1P02461 RN7SL204P-201ENST00000582831 262 ntBASIC21.57■■□□□ 1.04
COL3A1P02461 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
COL3A1P02461 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
COL3A1P02461 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 PCDHA14-201ENST00000506751 2298 ntBASIC21.56■■□□□ 1.04
COL3A1P02461 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC21.56■■□□□ 1.04
COL3A1P02461 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC21.56■■□□□ 1.04
COL3A1P02461 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
COL3A1P02461 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 AC236430.1-201ENST00000402231 743 ntBASIC21.56■■□□□ 1.04
COL3A1P02461 AL139010.1-201ENST00000454878 894 ntBASIC21.56■■□□□ 1.04
COL3A1P02461 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC21.56■■□□□ 1.04
COL3A1P02461 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
COL3A1P02461 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL3A1P02461 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
COL3A1P02461 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
COL3A1P02461 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
COL3A1P02461 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 AZGP1P1-201ENST00000411909 902 ntBASIC21.55■■□□□ 1.04
COL3A1P02461 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.55■■□□□ 1.04
COL3A1P02461 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 SERBP1P5-201ENST00000510079 1181 ntBASIC21.55■■□□□ 1.04
COL3A1P02461 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.55■■□□□ 1.04
COL3A1P02461 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC21.55■■□□□ 1.04
COL3A1P02461 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC21.55■■□□□ 1.04
COL3A1P02461 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC21.55■■□□□ 1.04
COL3A1P02461 PAM16-215ENST00000577031 548 ntTSL 4 BASIC21.55■■□□□ 1.04
COL3A1P02461 AC026979.3-201ENST00000607315 403 ntBASIC21.55■■□□□ 1.04
COL3A1P02461 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
COL3A1P02461 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.55■■□□□ 1.04
COL3A1P02461 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC21.55■■□□□ 1.04
COL3A1P02461 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC21.55■■□□□ 1.04
COL3A1P02461 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL3A1P02461 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC21.55■■□□□ 1.04
COL3A1P02461 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
COL3A1P02461 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC21.54■■□□□ 1.04
COL3A1P02461 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC21.54■■□□□ 1.04
COL3A1P02461 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.54■■□□□ 1.04
COL3A1P02461 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.54■■□□□ 1.04
COL3A1P02461 FAM207CP-201ENST00000443486 507 ntBASIC21.54■■□□□ 1.04
COL3A1P02461 PTK7-212ENST00000476760 902 ntTSL 2 BASIC21.54■■□□□ 1.04
COL3A1P02461 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.54■■□□□ 1.04
COL3A1P02461 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC21.54■■□□□ 1.04
COL3A1P02461 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC21.54■■□□□ 1.04
COL3A1P02461 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
COL3A1P02461 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC21.54■■□□□ 1.04
COL3A1P02461 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
COL3A1P02461 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC21.54■■□□□ 1.04
COL3A1P02461 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL3A1P02461 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC21.54■■□□□ 1.04
COL3A1P02461 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
COL3A1P02461 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.53■■□□□ 1.04
COL3A1P02461 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC21.53■■□□□ 1.04
COL3A1P02461 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC21.53■■□□□ 1.04
COL3A1P02461 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC21.53■■□□□ 1.04
COL3A1P02461 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
COL3A1P02461 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
COL3A1P02461 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
COL3A1P02461 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
COL3A1P02461 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.53■■□□□ 1.04
COL3A1P02461 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
COL3A1P02461 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms