Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 TFAMP1-201ENST00000412727 736 ntBASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 AC092474.2-201ENST00000424288 719 ntBASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 METTL21AP1-201ENST00000438852 635 ntBASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 SPDYE11-202ENST00000450699 704 ntBASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 KRT8P48-201ENST00000515599 1220 ntBASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 SPDYE9P-201ENST00000570642 692 ntBASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 SPDYE10P-202ENST00000612005 668 ntBASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 SPDYE8P-202ENST00000612377 668 ntBASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A3BPQ9Y5P4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 PMS2P4-201ENST00000412466 1052 ntBASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 RN7SL589P-201ENST00000481268 310 ntBASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AL135744.1-201ENST00000565098 629 ntBASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 AKAP8P1-201ENST00000434743 1349 ntBASIC18.49■□□□□ 0.55
COL4A3BPQ9Y5P4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 AL031731.1-201ENST00000642131 2094 ntBASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms