Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 DUX4L17-201ENST00000557360 1267 ntBASIC21.33■■□□□ 1.01
PDZRN3Q9UPQ7 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PDZRN3Q9UPQ7 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC21.33■■□□□ 1.01
PDZRN3Q9UPQ7 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PDZRN3Q9UPQ7 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
PDZRN3Q9UPQ7 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.33■■□□□ 1
PDZRN3Q9UPQ7 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PDZRN3Q9UPQ7 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC21.33■■□□□ 1
PDZRN3Q9UPQ7 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PDZRN3Q9UPQ7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
PDZRN3Q9UPQ7 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 AC125807.1-201ENST00000483097 614 ntBASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 AL158211.3-201ENST00000607385 239 ntBASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 DOC2GP-204ENST00000639052 2548 ntBASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 AL662844.4-201ENST00000606367 2838 ntBASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDZRN3Q9UPQ7 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 RBPMS2P1-201ENST00000437762 623 ntBASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 AC008761.3-201ENST00000624803 892 ntBASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 HARS-203ENST00000431330 1774 ntTSL 2 BASIC21.31■■□□□ 1
PDZRN3Q9UPQ7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 AL358472.5-202ENST00000641448 1267 ntBASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms