Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
CDX2Q99626 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX2Q99626 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
CDX2Q99626 AC120045.2-201ENST00000567334 178 ntBASIC17.01■□□□□ 0.31
CDX2Q99626 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CDX2Q99626 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX2Q99626 AL451050.2-201ENST00000606967 682 ntBASIC17.01■□□□□ 0.31
CDX2Q99626 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.01■□□□□ 0.31
CDX2Q99626 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
CDX2Q99626 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX2Q99626 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CDX2Q99626 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX2Q99626 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17■□□□□ 0.31
CDX2Q99626 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17■□□□□ 0.31
CDX2Q99626 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17■□□□□ 0.31
CDX2Q99626 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CDX2Q99626 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17■□□□□ 0.31
CDX2Q99626 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17■□□□□ 0.31
CDX2Q99626 HOMER2P2-201ENST00000451621 847 ntBASIC17■□□□□ 0.31
CDX2Q99626 AC104784.1-201ENST00000473096 294 ntBASIC17■□□□□ 0.31
CDX2Q99626 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17■□□□□ 0.31
CDX2Q99626 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17■□□□□ 0.31
CDX2Q99626 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17■□□□□ 0.31
CDX2Q99626 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CDX2Q99626 MIR3907-201ENST00000579424 151 ntBASIC17■□□□□ 0.31
CDX2Q99626 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17■□□□□ 0.31
CDX2Q99626 AC018635.2-201ENST00000608625 364 ntBASIC17■□□□□ 0.31
CDX2Q99626 AC005252.2-201ENST00000624630 1141 ntBASIC17■□□□□ 0.31
CDX2Q99626 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC17■□□□□ 0.31
CDX2Q99626 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
CDX2Q99626 AC073130.3-201ENST00000624389 2278 ntBASIC17■□□□□ 0.31
CDX2Q99626 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17■□□□□ 0.31
CDX2Q99626 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17■□□□□ 0.31
CDX2Q99626 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17■□□□□ 0.31
CDX2Q99626 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX2Q99626 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17■□□□□ 0.31
CDX2Q99626 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
CDX2Q99626 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CDX2Q99626 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX2Q99626 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX2Q99626 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX2Q99626 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX2Q99626 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX2Q99626 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX2Q99626 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX2Q99626 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX2Q99626 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.99■□□□□ 0.31
CDX2Q99626 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX2Q99626 AC134698.3-201ENST00000523880 214 ntBASIC16.99■□□□□ 0.31
CDX2Q99626 IQSEC3P1-201ENST00000538799 536 ntBASIC16.99■□□□□ 0.31
CDX2Q99626 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 AL096828.3-201ENST00000615354 462 ntBASIC16.99■□□□□ 0.31
CDX2Q99626 AP001505.2-201ENST00000616815 443 ntBASIC16.99■□□□□ 0.31
CDX2Q99626 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX2Q99626 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CDX2Q99626 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX2Q99626 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX2Q99626 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CDX2Q99626 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.98■□□□□ 0.31
CDX2Q99626 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX2Q99626 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 AC018735.1-201ENST00000437208 1502 ntBASIC16.98■□□□□ 0.31
CDX2Q99626 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX2Q99626 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms