Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 MEIS3P1-201ENST00000495167 958 ntBASIC16.55■□□□□ 0.24
HMGB4Q8WW32 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 AC013467.2-201ENST00000605472 835 ntBASIC16.55■□□□□ 0.24
HMGB4Q8WW32 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 KRT8P39-201ENST00000396270 1433 ntBASIC16.54■□□□□ 0.24
HMGB4Q8WW32 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 BANF1P1-201ENST00000553684 263 ntBASIC16.54■□□□□ 0.24
HMGB4Q8WW32 AL079307.3-201ENST00000556114 283 ntBASIC16.54■□□□□ 0.24
HMGB4Q8WW32 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.54■□□□□ 0.24
HMGB4Q8WW32 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.54■□□□□ 0.24
HMGB4Q8WW32 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.54■□□□□ 0.24
HMGB4Q8WW32 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.54■□□□□ 0.24
HMGB4Q8WW32 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB4Q8WW32 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 AC067852.2-201ENST00000590513 2313 ntBASIC16.53■□□□□ 0.24
HMGB4Q8WW32 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 AC135586.1-201ENST00000539323 574 ntBASIC16.53■□□□□ 0.24
HMGB4Q8WW32 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms