Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FXR1-221ENST00000491674 365 ntTSL 2 BASIC21.63■■□□□ 1.05
USP54Q70EL1 AC092552.1-201ENST00000547243 906 ntBASIC21.63■■□□□ 1.05
USP54Q70EL1 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC21.63■■□□□ 1.05
USP54Q70EL1 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC21.63■■□□□ 1.05
USP54Q70EL1 AL133373.2-201ENST00000623187 2828 ntBASIC21.63■■□□□ 1.05
USP54Q70EL1 INTS4P2-202ENST00000614726 2019 ntBASIC21.63■■□□□ 1.05
USP54Q70EL1 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
USP54Q70EL1 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
USP54Q70EL1 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC21.63■■□□□ 1.05
USP54Q70EL1 GNRHR2-203ENST00000581100 1187 ntBASIC21.63■■□□□ 1.05
USP54Q70EL1 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
USP54Q70EL1 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC21.63■■□□□ 1.05
USP54Q70EL1 AL512343.1-201ENST00000605837 169 ntBASIC21.63■■□□□ 1.05
USP54Q70EL1 Six3os1_5.1-201ENST00000611000 271 ntBASIC21.63■■□□□ 1.05
USP54Q70EL1 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
USP54Q70EL1 DEK-201ENST00000244776 1441 ntTSL 2 BASIC21.62■■□□□ 1.05
USP54Q70EL1 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC21.62■■□□□ 1.05
USP54Q70EL1 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.62■■□□□ 1.05
USP54Q70EL1 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
USP54Q70EL1 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC21.62■■□□□ 1.05
USP54Q70EL1 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC21.62■■□□□ 1.05
USP54Q70EL1 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC21.62■■□□□ 1.05
USP54Q70EL1 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
USP54Q70EL1 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC21.62■■□□□ 1.05
USP54Q70EL1 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
USP54Q70EL1 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC21.62■■□□□ 1.05
USP54Q70EL1 CDC14C-201ENST00000428251 1719 ntBASIC21.62■■□□□ 1.05
USP54Q70EL1 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC21.62■■□□□ 1.05
USP54Q70EL1 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP54Q70EL1 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
USP54Q70EL1 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
USP54Q70EL1 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC21.61■■□□□ 1.05
USP54Q70EL1 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
USP54Q70EL1 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP54Q70EL1 PKIG-203ENST00000372887 769 ntTSL 3 BASIC21.61■■□□□ 1.05
USP54Q70EL1 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
USP54Q70EL1 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC21.61■■□□□ 1.05
USP54Q70EL1 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP54Q70EL1 KRT18P64-201ENST00000434946 1219 ntBASIC21.61■■□□□ 1.05
USP54Q70EL1 NME4-207ENST00000450036 985 ntTSL 3 BASIC21.61■■□□□ 1.05
USP54Q70EL1 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC21.61■■□□□ 1.05
USP54Q70EL1 SLED1-202ENST00000512051 380 ntBASIC21.61■■□□□ 1.05
USP54Q70EL1 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC21.61■■□□□ 1.05
USP54Q70EL1 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC21.61■■□□□ 1.05
USP54Q70EL1 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC21.61■■□□□ 1.05
USP54Q70EL1 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC21.61■■□□□ 1.05
USP54Q70EL1 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC21.61■■□□□ 1.05
USP54Q70EL1 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
USP54Q70EL1 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
USP54Q70EL1 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC21.61■■□□□ 1.05
USP54Q70EL1 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
USP54Q70EL1 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC21.61■■□□□ 1.05
USP54Q70EL1 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.61■■□□□ 1.05
USP54Q70EL1 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP54Q70EL1 AC018665.1-201ENST00000622927 1362 ntBASIC21.61■■□□□ 1.05
USP54Q70EL1 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
USP54Q70EL1 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 AC022210.1-201ENST00000449856 793 ntBASIC21.6■■□□□ 1.05
USP54Q70EL1 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC21.6■■□□□ 1.05
USP54Q70EL1 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC21.6■■□□□ 1.05
USP54Q70EL1 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC21.6■■□□□ 1.05
USP54Q70EL1 AP005482.1-201ENST00000563722 1273 ntBASIC21.6■■□□□ 1.05
USP54Q70EL1 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC21.6■■□□□ 1.05
USP54Q70EL1 AL049840.4-201ENST00000602422 811 ntBASIC21.6■■□□□ 1.05
USP54Q70EL1 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
USP54Q70EL1 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 AC007613.1-201ENST00000572811 2597 ntBASIC21.6■■□□□ 1.05
USP54Q70EL1 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.6■■□□□ 1.05
USP54Q70EL1 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP54Q70EL1 MPV17-208ENST00000405076 603 ntTSL 5 BASIC21.6■■□□□ 1.05
USP54Q70EL1 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC21.6■■□□□ 1.05
USP54Q70EL1 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC21.6■■□□□ 1.05
USP54Q70EL1 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC21.6■■□□□ 1.05
USP54Q70EL1 MIR4259-201ENST00000584466 101 ntBASIC21.6■■□□□ 1.05
USP54Q70EL1 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP54Q70EL1 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP54Q70EL1 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP54Q70EL1 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP54Q70EL1 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC21.59■■□□□ 1.05
USP54Q70EL1 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms