Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
COPAP53621 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.11■□□□□ 0.33
COPAP53621 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.11■□□□□ 0.33
COPAP53621 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COPAP53621 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
COPAP53621 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COPAP53621 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COPAP53621 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COPAP53621 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.11■□□□□ 0.33
COPAP53621 TIMM8BP1-201ENST00000452384 211 ntBASIC17.11■□□□□ 0.33
COPAP53621 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.11■□□□□ 0.33
COPAP53621 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 AC093520.2-201ENST00000561830 333 ntBASIC17.11■□□□□ 0.33
COPAP53621 LINC02084-201ENST00000606069 1096 ntBASIC17.11■□□□□ 0.33
COPAP53621 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
COPAP53621 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COPAP53621 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
COPAP53621 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COPAP53621 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COPAP53621 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COPAP53621 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COPAP53621 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COPAP53621 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COPAP53621 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COPAP53621 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
COPAP53621 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.1■□□□□ 0.33
COPAP53621 HMGA1P7-201ENST00000406908 502 ntBASIC17.1■□□□□ 0.33
COPAP53621 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.1■□□□□ 0.33
COPAP53621 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.1■□□□□ 0.33
COPAP53621 AL671277.1-201ENST00000429656 993 ntBASIC17.1■□□□□ 0.33
COPAP53621 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.1■□□□□ 0.33
COPAP53621 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COPAP53621 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.1■□□□□ 0.33
COPAP53621 KRT8P48-201ENST00000515599 1220 ntBASIC17.1■□□□□ 0.33
COPAP53621 AC109322.1-201ENST00000524499 1264 ntBASIC17.1■□□□□ 0.33
COPAP53621 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.1■□□□□ 0.33
COPAP53621 AC005412.3-201ENST00000580309 715 ntBASIC17.1■□□□□ 0.33
COPAP53621 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.1■□□□□ 0.33
COPAP53621 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.1■□□□□ 0.33
COPAP53621 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
COPAP53621 AL391005.1-201ENST00000623953 2435 ntBASIC17.1■□□□□ 0.33
COPAP53621 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.1■□□□□ 0.33
COPAP53621 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COPAP53621 LINC02199-201ENST00000506655 2702 ntBASIC17.1■□□□□ 0.33
COPAP53621 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.1■□□□□ 0.33
COPAP53621 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.1■□□□□ 0.33
COPAP53621 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COPAP53621 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COPAP53621 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.09■□□□□ 0.33
COPAP53621 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms