Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.26■□□□□ 0.67
CDKL5O76039 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CDKL5O76039 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
CDKL5O76039 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.26■□□□□ 0.67
CDKL5O76039 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.26■□□□□ 0.67
CDKL5O76039 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.26■□□□□ 0.67
CDKL5O76039 AC140658.5-201ENST00000438532 169 ntBASIC19.26■□□□□ 0.67
CDKL5O76039 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.26■□□□□ 0.67
CDKL5O76039 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.26■□□□□ 0.67
CDKL5O76039 SLC25A1P1-201ENST00000528351 927 ntBASIC19.26■□□□□ 0.67
CDKL5O76039 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.26■□□□□ 0.67
CDKL5O76039 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CDKL5O76039 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CDKL5O76039 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CDKL5O76039 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC19.26■□□□□ 0.67
CDKL5O76039 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.26■□□□□ 0.67
CDKL5O76039 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.25■□□□□ 0.67
CDKL5O76039 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.25■□□□□ 0.67
CDKL5O76039 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 MED15P5-201ENST00000423150 992 ntBASIC19.25■□□□□ 0.67
CDKL5O76039 KRT18P2-201ENST00000447938 1258 ntBASIC19.25■□□□□ 0.67
CDKL5O76039 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.25■□□□□ 0.67
CDKL5O76039 FAM197Y3-203ENST00000618346 717 ntBASIC19.25■□□□□ 0.67
CDKL5O76039 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CDKL5O76039 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.25■□□□□ 0.67
CDKL5O76039 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CDKL5O76039 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CDKL5O76039 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDKL5O76039 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC19.25■□□□□ 0.67
CDKL5O76039 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.24■□□□□ 0.67
CDKL5O76039 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.24■□□□□ 0.67
CDKL5O76039 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.24■□□□□ 0.67
CDKL5O76039 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDKL5O76039 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.24■□□□□ 0.67
CDKL5O76039 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.24■□□□□ 0.67
CDKL5O76039 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.24■□□□□ 0.67
CDKL5O76039 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
CDKL5O76039 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CDKL5O76039 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.24■□□□□ 0.67
CDKL5O76039 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.24■□□□□ 0.67
CDKL5O76039 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.24■□□□□ 0.67
CDKL5O76039 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.24■□□□□ 0.67
CDKL5O76039 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDKL5O76039 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms