Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 METTL21AP1-201ENST00000438852 635 ntBASIC16.65■□□□□ 0.26
LHX3Q9UBR4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 AC109322.1-201ENST00000524499 1264 ntBASIC16.65■□□□□ 0.26
LHX3Q9UBR4 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 KRT18P28-201ENST00000453838 1332 ntBASIC16.65■□□□□ 0.26
LHX3Q9UBR4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LHX3Q9UBR4 AC005622.1-201ENST00000636801 1703 ntBASIC16.65■□□□□ 0.26
LHX3Q9UBR4 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
LHX3Q9UBR4 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.64■□□□□ 0.26
LHX3Q9UBR4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
LHX3Q9UBR4 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
LHX3Q9UBR4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 RBPMS2P1-201ENST00000437762 623 ntBASIC16.64■□□□□ 0.25
LHX3Q9UBR4 HLA-J-203ENST00000494367 1087 ntBASIC16.64■□□□□ 0.25
LHX3Q9UBR4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LHX3Q9UBR4 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 SPDYE14P-201ENST00000442619 822 ntBASIC16.63■□□□□ 0.25
LHX3Q9UBR4 POU5F1P6-201ENST00000466990 990 ntBASIC16.63■□□□□ 0.25
LHX3Q9UBR4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 ALG1L8P-201ENST00000533887 760 ntBASIC16.63■□□□□ 0.25
LHX3Q9UBR4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 SPTSSB-204ENST00000617024 1292 ntBASIC16.63■□□□□ 0.25
LHX3Q9UBR4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms