Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CEP83-AS1-201ENST00000623122 2482 ntBASIC20■□□□□ 0.79
CCDC88AQ3V6T2 AL139011.1-202ENST00000642063 584 ntBASIC20■□□□□ 0.79
CCDC88AQ3V6T2 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC20■□□□□ 0.79
CCDC88AQ3V6T2 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 GGT4P-201ENST00000623672 1708 ntBASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 ACTBP11-201ENST00000436287 1126 ntBASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AC243960.2-201ENST00000600996 747 ntBASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 MIR8072-201ENST00000614241 80 ntBASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AC006277.1-201ENST00000624348 1610 ntBASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 FAM21FP-201ENST00000426241 1131 ntBASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC88AQ3V6T2 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 AC005229.1-201ENST00000392885 409 ntBASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 AC026471.1-201ENST00000564629 3026 ntBASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC88AQ3V6T2 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 STX1A-203ENST00000395155 783 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 RAD18-204ENST00000418463 563 ntTSL 4 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 RAD18-205ENST00000421052 582 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 SERBP1P3-201ENST00000459980 809 ntBASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 AL391069.4-201ENST00000609583 481 ntBASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 AL033527.5-201ENST00000641382 801 ntBASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC88AQ3V6T2 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms