Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.34■□□□□ 0.21
LIMK1P53667 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.34■□□□□ 0.21
LIMK1P53667 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.34■□□□□ 0.21
LIMK1P53667 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIMK1P53667 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.34■□□□□ 0.21
LIMK1P53667 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIMK1P53667 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIMK1P53667 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
LIMK1P53667 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
LIMK1P53667 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.34■□□□□ 0.21
LIMK1P53667 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIMK1P53667 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LIMK1P53667 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIMK1P53667 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LIMK1P53667 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.34■□□□□ 0.21
LIMK1P53667 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LIMK1P53667 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.34■□□□□ 0.21
LIMK1P53667 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIMK1P53667 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LIMK1P53667 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LIMK1P53667 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIMK1P53667 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LIMK1P53667 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LIMK1P53667 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIMK1P53667 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIMK1P53667 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.33■□□□□ 0.21
LIMK1P53667 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.33■□□□□ 0.2
LIMK1P53667 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.33■□□□□ 0.2
LIMK1P53667 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.33■□□□□ 0.2
LIMK1P53667 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.33■□□□□ 0.2
LIMK1P53667 AC135586.1-201ENST00000539323 574 ntBASIC16.33■□□□□ 0.2
LIMK1P53667 AL138918.1-201ENST00000568306 659 ntBASIC16.33■□□□□ 0.2
LIMK1P53667 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.33■□□□□ 0.2
LIMK1P53667 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LIMK1P53667 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LIMK1P53667 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LIMK1P53667 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LIMK1P53667 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
LIMK1P53667 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LIMK1P53667 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LIMK1P53667 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.33■□□□□ 0.2
LIMK1P53667 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.33■□□□□ 0.2
LIMK1P53667 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMK1P53667 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
LIMK1P53667 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.32■□□□□ 0.2
LIMK1P53667 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 AL353705.2-201ENST00000428243 662 ntBASIC16.32■□□□□ 0.2
LIMK1P53667 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.32■□□□□ 0.2
LIMK1P53667 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.32■□□□□ 0.2
LIMK1P53667 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.32■□□□□ 0.2
LIMK1P53667 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
LIMK1P53667 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMK1P53667 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LIMK1P53667 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMK1P53667 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.31■□□□□ 0.2
LIMK1P53667 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LIMK1P53667 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LIMK1P53667 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.31■□□□□ 0.2
LIMK1P53667 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
LIMK1P53667 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMK1P53667 FAM86MP-201ENST00000340703 885 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms