Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC18.32■□□□□ 0.52
HTTP42858 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HTTP42858 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HTTP42858 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.31■□□□□ 0.52
HTTP42858 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC18.31■□□□□ 0.52
HTTP42858 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC18.31■□□□□ 0.52
HTTP42858 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.31■□□□□ 0.52
HTTP42858 TIMM17BP1-201ENST00000545713 516 ntBASIC18.31■□□□□ 0.52
HTTP42858 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.31■□□□□ 0.52
HTTP42858 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.31■□□□□ 0.52
HTTP42858 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HTTP42858 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HTTP42858 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.31■□□□□ 0.52
HTTP42858 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.31■□□□□ 0.52
HTTP42858 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.31■□□□□ 0.52
HTTP42858 AC244669.2-201ENST00000612320 853 ntBASIC18.31■□□□□ 0.52
HTTP42858 PRKN-211ENST00000615065 261 ntTSL 5 BASIC18.31■□□□□ 0.52
HTTP42858 ABBA01031663.1-201ENST00000635630 790 ntBASIC18.31■□□□□ 0.52
HTTP42858 AC008687.7-202ENST00000637404 953 ntBASIC18.31■□□□□ 0.52
HTTP42858 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.31■□□□□ 0.52
HTTP42858 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HTTP42858 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.3■□□□□ 0.52
HTTP42858 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HTTP42858 AL021920.2-201ENST00000624828 1351 ntBASIC18.3■□□□□ 0.52
HTTP42858 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.3■□□□□ 0.52
HTTP42858 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HTTP42858 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
HTTP42858 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HTTP42858 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HTTP42858 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HTTP42858 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HTTP42858 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HTTP42858 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HTTP42858 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HTTP42858 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HTTP42858 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HTTP42858 ZBTB12BP-201ENST00000314232 1122 ntBASIC18.3■□□□□ 0.52
HTTP42858 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC18.3■□□□□ 0.52
HTTP42858 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC18.3■□□□□ 0.52
HTTP42858 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HTTP42858 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.3■□□□□ 0.52
HTTP42858 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC18.3■□□□□ 0.52
HTTP42858 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.3■□□□□ 0.52
HTTP42858 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HTTP42858 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
HTTP42858 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HTTP42858 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.29■□□□□ 0.52
HTTP42858 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC18.29■□□□□ 0.52
HTTP42858 AC124283.3-201ENST00000570869 594 ntBASIC18.29■□□□□ 0.52
HTTP42858 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC18.29■□□□□ 0.52
HTTP42858 AL354751.1-201ENST00000412768 1863 ntBASIC18.29■□□□□ 0.52
HTTP42858 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HTTP42858 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HTTP42858 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 GGT4P-201ENST00000623672 1708 ntBASIC18.29■□□□□ 0.52
HTTP42858 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.29■□□□□ 0.52
HTTP42858 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HTTP42858 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.29■□□□□ 0.52
HTTP42858 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HTTP42858 NUS1P3-201ENST00000423502 862 ntBASIC18.29■□□□□ 0.52
HTTP42858 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.29■□□□□ 0.52
HTTP42858 TMEM198B-204ENST00000484016 896 ntBASIC18.29■□□□□ 0.52
HTTP42858 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HTTP42858 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HTTP42858 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
HTTP42858 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 RPL17P11-201ENST00000417593 544 ntBASIC18.29■□□□□ 0.52
HTTP42858 CNN2P8-201ENST00000421872 913 ntBASIC18.29■□□□□ 0.52
HTTP42858 AC004898.1-201ENST00000451057 766 ntBASIC18.29■□□□□ 0.52
HTTP42858 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.29■□□□□ 0.52
HTTP42858 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
HTTP42858 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HTTP42858 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.29■□□□□ 0.52
HTTP42858 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HTTP42858 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC18.28■□□□□ 0.52
HTTP42858 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HTTP42858 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HTTP42858 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HTTP42858 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms