Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.84□□□□□ -0.35
HOXD3P31249 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.84□□□□□ -0.35
HOXD3P31249 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC12.84□□□□□ -0.35
HOXD3P31249 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.84□□□□□ -0.35
HOXD3P31249 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.84□□□□□ -0.35
HOXD3P31249 AC239800.4-201ENST00000603712 296 ntBASIC12.84□□□□□ -0.35
HOXD3P31249 AC099522.2-201ENST00000607001 744 ntBASIC12.84□□□□□ -0.35
HOXD3P31249 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 AL161645.1-201ENST00000622716 1255 ntBASIC12.84□□□□□ -0.35
HOXD3P31249 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXD3P31249 AC105020.1-201ENST00000435356 2205 ntBASIC12.84□□□□□ -0.35
HOXD3P31249 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXD3P31249 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HOXD3P31249 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
HOXD3P31249 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
HOXD3P31249 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
HOXD3P31249 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HOXD3P31249 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
HOXD3P31249 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC12.83□□□□□ -0.35
HOXD3P31249 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.35
HOXD3P31249 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HOXD3P31249 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 KRT18P32-201ENST00000424695 1287 ntBASIC12.83□□□□□ -0.36
HOXD3P31249 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC12.83□□□□□ -0.36
HOXD3P31249 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 FAM86C2P-203ENST00000528684 1004 ntBASIC12.83□□□□□ -0.36
HOXD3P31249 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC12.83□□□□□ -0.36
HOXD3P31249 AC109635.5-201ENST00000533593 962 ntBASIC12.83□□□□□ -0.36
HOXD3P31249 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 MIR3909-201ENST00000579518 119 ntBASIC12.83□□□□□ -0.36
HOXD3P31249 AC138761.1-201ENST00000584393 385 ntBASIC12.83□□□□□ -0.36
HOXD3P31249 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 AC009093.7-201ENST00000623853 1223 ntBASIC12.83□□□□□ -0.36
HOXD3P31249 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HOXD3P31249 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC12.83□□□□□ -0.36
HOXD3P31249 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 AL645728.1-201ENST00000366221 2101 ntBASIC12.83□□□□□ -0.36
HOXD3P31249 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms