Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A5P29400 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL4A5P29400 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A5P29400 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.55■□□□□ 0.72
COL4A5P29400 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.55■□□□□ 0.72
COL4A5P29400 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL4A5P29400 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A5P29400 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL4A5P29400 RPL7P3-201ENST00000441388 714 ntBASIC19.55■□□□□ 0.72
COL4A5P29400 AC007551.1-201ENST00000457394 519 ntBASIC19.55■□□□□ 0.72
COL4A5P29400 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.55■□□□□ 0.72
COL4A5P29400 TDH-203ENST00000531764 1110 ntBASIC19.55■□□□□ 0.72
COL4A5P29400 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A5P29400 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC19.55■□□□□ 0.72
COL4A5P29400 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.55■□□□□ 0.72
COL4A5P29400 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.55■□□□□ 0.72
COL4A5P29400 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A5P29400 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL4A5P29400 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A5P29400 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A5P29400 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A5P29400 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A5P29400 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A5P29400 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A5P29400 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A5P29400 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A5P29400 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A5P29400 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A5P29400 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.54■□□□□ 0.72
COL4A5P29400 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A5P29400 ACTG1P3-201ENST00000431775 1114 ntBASIC19.54■□□□□ 0.72
COL4A5P29400 BCRP2-202ENST00000447763 634 ntBASIC19.54■□□□□ 0.72
COL4A5P29400 FO681548.1-201ENST00000455617 1132 ntBASIC19.54■□□□□ 0.72
COL4A5P29400 BCRP6-201ENST00000510112 632 ntBASIC19.54■□□□□ 0.72
COL4A5P29400 BCRP7-201ENST00000511549 544 ntBASIC19.54■□□□□ 0.72
COL4A5P29400 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.54■□□□□ 0.72
COL4A5P29400 AC068587.3-201ENST00000526613 355 ntBASIC19.54■□□□□ 0.72
COL4A5P29400 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A5P29400 KRT8P22-201ENST00000562317 1415 ntBASIC19.54■□□□□ 0.72
COL4A5P29400 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.54■□□□□ 0.72
COL4A5P29400 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.54■□□□□ 0.72
COL4A5P29400 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.54■□□□□ 0.72
COL4A5P29400 MIR4321-201ENST00000592276 80 ntBASIC19.54■□□□□ 0.72
COL4A5P29400 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.54■□□□□ 0.72
COL4A5P29400 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A5P29400 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A5P29400 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A5P29400 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
COL4A5P29400 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A5P29400 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 FO393414.2-201ENST00000405153 598 ntBASIC19.53■□□□□ 0.72
COL4A5P29400 GOLGA2P4-201ENST00000441462 777 ntBASIC19.53■□□□□ 0.72
COL4A5P29400 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.53■□□□□ 0.72
COL4A5P29400 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
COL4A5P29400 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.53■□□□□ 0.72
COL4A5P29400 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.53■□□□□ 0.72
COL4A5P29400 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL4A5P29400 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
COL4A5P29400 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL4A5P29400 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.53■□□□□ 0.72
COL4A5P29400 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
COL4A5P29400 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A5P29400 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A5P29400 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
COL4A5P29400 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A5P29400 BRWD1P1-201ENST00000401091 371 ntBASIC19.52■□□□□ 0.72
COL4A5P29400 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A5P29400 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A5P29400 FTH1P14-201ENST00000482930 551 ntBASIC19.52■□□□□ 0.72
COL4A5P29400 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.52■□□□□ 0.72
COL4A5P29400 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.52■□□□□ 0.72
COL4A5P29400 AP001889.1-201ENST00000525414 633 ntBASIC19.52■□□□□ 0.72
COL4A5P29400 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.52■□□□□ 0.72
COL4A5P29400 TIMM17BP1-201ENST00000545713 516 ntBASIC19.52■□□□□ 0.72
COL4A5P29400 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC19.52■□□□□ 0.72
COL4A5P29400 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC19.52■□□□□ 0.72
COL4A5P29400 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
COL4A5P29400 AC244669.2-201ENST00000612320 853 ntBASIC19.52■□□□□ 0.72
COL4A5P29400 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms