Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH3P22223 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CDH3P22223 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CDH3P22223 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.33■□□□□ 0.2
CDH3P22223 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.33■□□□□ 0.2
CDH3P22223 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CDH3P22223 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
CDH3P22223 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.32■□□□□ 0.2
CDH3P22223 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.32■□□□□ 0.2
CDH3P22223 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.32■□□□□ 0.2
CDH3P22223 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CDH3P22223 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.32■□□□□ 0.2
CDH3P22223 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.32■□□□□ 0.2
CDH3P22223 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 AL078644.1-201ENST00000609881 752 ntBASIC16.32■□□□□ 0.2
CDH3P22223 C20orf181-201ENST00000623918 480 ntBASIC16.32■□□□□ 0.2
CDH3P22223 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CDH3P22223 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
CDH3P22223 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CDH3P22223 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH3P22223 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH3P22223 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH3P22223 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.31■□□□□ 0.2
CDH3P22223 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDH3P22223 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH3P22223 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH3P22223 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH3P22223 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH3P22223 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 ALG1L5P-201ENST00000482043 771 ntBASIC16.31■□□□□ 0.2
CDH3P22223 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH3P22223 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH3P22223 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
CDH3P22223 AC055717.3-201ENST00000622967 595 ntBASIC16.31■□□□□ 0.2
CDH3P22223 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH3P22223 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH3P22223 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH3P22223 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH3P22223 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH3P22223 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH3P22223 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDH3P22223 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH3P22223 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH3P22223 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH3P22223 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH3P22223 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH3P22223 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms