Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
LDB2O43679 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LDB2O43679 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LDB2O43679 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.57■□□□□ 0.24
LDB2O43679 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.57■□□□□ 0.24
LDB2O43679 AP002472.1-201ENST00000577490 586 ntBASIC16.57■□□□□ 0.24
LDB2O43679 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.57■□□□□ 0.24
LDB2O43679 AC068137.2-201ENST00000605408 478 ntBASIC16.57■□□□□ 0.24
LDB2O43679 GPALPP1-207ENST00000611650 899 ntBASIC16.57■□□□□ 0.24
LDB2O43679 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
LDB2O43679 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB2O43679 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB2O43679 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB2O43679 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
LDB2O43679 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
LDB2O43679 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.56■□□□□ 0.24
LDB2O43679 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.56■□□□□ 0.24
LDB2O43679 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.56■□□□□ 0.24
LDB2O43679 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.56■□□□□ 0.24
LDB2O43679 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
LDB2O43679 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LDB2O43679 AL391005.1-201ENST00000623953 2435 ntBASIC16.56■□□□□ 0.24
LDB2O43679 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB2O43679 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB2O43679 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB2O43679 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.55■□□□□ 0.24
LDB2O43679 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB2O43679 AC026691.1-201ENST00000602502 2017 ntBASIC16.55■□□□□ 0.24
LDB2O43679 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms