Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PDZRN3Q9UPQ7 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PDZRN3Q9UPQ7 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
PDZRN3Q9UPQ7 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.39■■□□□ 1.02
PDZRN3Q9UPQ7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PDZRN3Q9UPQ7 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
PDZRN3Q9UPQ7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PDZRN3Q9UPQ7 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.39■■□□□ 1.02
PDZRN3Q9UPQ7 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
PDZRN3Q9UPQ7 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 AC002472.2-201ENST00000442739 958 ntBASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 AC087163.2-201ENST00000457299 853 ntBASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 SLC25A6P2-201ENST00000497974 877 ntBASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 AC012645.4-201ENST00000610691 1061 ntBASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 AL161645.1-201ENST00000622716 1255 ntBASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 WT1-209ENST00000530998 2421 ntTSL 2 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
PDZRN3Q9UPQ7 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 TSPY16P-201ENST00000449843 468 ntBASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 AC243562.1-201ENST00000560672 389 ntBASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 RARRES2P8-201ENST00000566335 367 ntBASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC21.38■■□□□ 1.01
PDZRN3Q9UPQ7 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 MIR943-201ENST00000401286 94 ntBASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 AC107890.1-201ENST00000422478 521 ntBASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 COQ6-210ENST00000554920 649 ntTSL 3 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 KRT8P23-201ENST00000560090 1207 ntBASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 AC140878.1-201ENST00000565277 250 ntBASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 RN7SL204P-201ENST00000582831 262 ntBASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDZRN3Q9UPQ7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDZRN3Q9UPQ7 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
PDZRN3Q9UPQ7 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.36■■□□□ 1.01
PDZRN3Q9UPQ7 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC21.36■■□□□ 1.01
PDZRN3Q9UPQ7 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDZRN3Q9UPQ7 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDZRN3Q9UPQ7 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
PDZRN3Q9UPQ7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDZRN3Q9UPQ7 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms