Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 AC109635.5-201ENST00000533593 962 ntBASIC17.78■□□□□ 0.44
SIX2Q9NPC8 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 AC064836.3-201ENST00000607928 673 ntBASIC17.78■□□□□ 0.44
SIX2Q9NPC8 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 IL9RP2-201ENST00000423948 1312 ntBASIC17.77■□□□□ 0.44
SIX2Q9NPC8 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 AC023141.13-201ENST00000604991 943 ntBASIC17.77■□□□□ 0.44
SIX2Q9NPC8 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 AC004877.2-201ENST00000623941 599 ntBASIC17.77■□□□□ 0.44
SIX2Q9NPC8 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX2Q9NPC8 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX2Q9NPC8 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX2Q9NPC8 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SIX2Q9NPC8 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
SIX2Q9NPC8 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX2Q9NPC8 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SIX2Q9NPC8 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.77■□□□□ 0.43
SIX2Q9NPC8 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.77■□□□□ 0.43
SIX2Q9NPC8 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 AC025580.3-201ENST00000617932 1424 ntBASIC17.76■□□□□ 0.43
SIX2Q9NPC8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 AC092474.2-201ENST00000424288 719 ntBASIC17.76■□□□□ 0.43
SIX2Q9NPC8 AC007967.2-201ENST00000432613 625 ntBASIC17.76■□□□□ 0.43
SIX2Q9NPC8 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 RPL13AP23-201ENST00000480739 586 ntBASIC17.76■□□□□ 0.43
SIX2Q9NPC8 SLC25A1P1-201ENST00000528351 927 ntBASIC17.76■□□□□ 0.43
SIX2Q9NPC8 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 AC092919.2-201ENST00000623631 1645 ntBASIC17.76■□□□□ 0.43
SIX2Q9NPC8 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX2Q9NPC8 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms