Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AP000842.3-202ENST00000569238 1080 ntBASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 RN7SL204P-201ENST00000582831 262 ntBASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AL390961.4-201ENST00000623958 2535 ntBASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 RNF34-208ENST00000555076 593 ntTSL 3 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC026150.2-201ENST00000564693 1156 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC008667.4-201ENST00000607370 168 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC092919.2-201ENST00000623631 1645 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 KCNJ14-202ENST00000391884 3990 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC190387.1-201ENST00000551683 408 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MIR4751-201ENST00000578027 74 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 WBP2-203ENST00000433525 928 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms