Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC21.7■■□□□ 1.06
USP54Q70EL1 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC21.7■■□□□ 1.06
USP54Q70EL1 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC21.7■■□□□ 1.06
USP54Q70EL1 AC015936.2-201ENST00000593177 259 ntBASIC21.7■■□□□ 1.06
USP54Q70EL1 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
USP54Q70EL1 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP54Q70EL1 AC005622.1-201ENST00000636801 1703 ntBASIC21.7■■□□□ 1.06
USP54Q70EL1 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP54Q70EL1 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC21.7■■□□□ 1.06
USP54Q70EL1 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.7■■□□□ 1.06
USP54Q70EL1 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC21.7■■□□□ 1.06
USP54Q70EL1 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC21.7■■□□□ 1.06
USP54Q70EL1 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 TARDBPP1-201ENST00000442013 1203 ntBASIC21.69■■□□□ 1.06
USP54Q70EL1 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
USP54Q70EL1 KRT17P8-201ENST00000540749 863 ntBASIC21.69■■□□□ 1.06
USP54Q70EL1 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 AC036164.1-201ENST00000570544 333 ntBASIC21.69■■□□□ 1.06
USP54Q70EL1 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC21.69■■□□□ 1.06
USP54Q70EL1 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 LETM1P2-201ENST00000597330 2178 ntBASIC21.69■■□□□ 1.06
USP54Q70EL1 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 PAM16-204ENST00000571941 674 ntTSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC21.69■■□□□ 1.06
USP54Q70EL1 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP54Q70EL1 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC21.69■■□□□ 1.06
USP54Q70EL1 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
USP54Q70EL1 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC21.69■■□□□ 1.06
USP54Q70EL1 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC21.68■■□□□ 1.06
USP54Q70EL1 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC21.68■■□□□ 1.06
USP54Q70EL1 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
USP54Q70EL1 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
USP54Q70EL1 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC21.68■■□□□ 1.06
USP54Q70EL1 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC21.68■■□□□ 1.06
USP54Q70EL1 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC21.68■■□□□ 1.06
USP54Q70EL1 FADS2-205ENST00000517839 469 ntTSL 3 BASIC21.68■■□□□ 1.06
USP54Q70EL1 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC21.68■■□□□ 1.06
USP54Q70EL1 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC21.68■■□□□ 1.06
USP54Q70EL1 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC21.68■■□□□ 1.06
USP54Q70EL1 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC21.68■■□□□ 1.06
USP54Q70EL1 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC21.68■■□□□ 1.06
USP54Q70EL1 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
USP54Q70EL1 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.68■■□□□ 1.06
USP54Q70EL1 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 AP001094.4-201ENST00000579008 2176 ntBASIC21.68■■□□□ 1.06
USP54Q70EL1 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
USP54Q70EL1 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
USP54Q70EL1 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP54Q70EL1 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
USP54Q70EL1 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC21.67■■□□□ 1.06
USP54Q70EL1 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.67■■□□□ 1.06
USP54Q70EL1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 TOMM22P5-201ENST00000416399 439 ntBASIC21.67■■□□□ 1.06
USP54Q70EL1 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 AL162726.2-201ENST00000438986 1017 ntBASIC21.67■■□□□ 1.06
USP54Q70EL1 RPS2P32-201ENST00000439199 892 ntBASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms