Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC10.06□□□□□ -0.8
HSPG2P98160 AC234644.1-201ENST00000406065 370 ntBASIC10.06□□□□□ -0.8
HSPG2P98160 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC10.06□□□□□ -0.8
HSPG2P98160 LY6E-208ENST00000520531 490 ntTSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC10.06□□□□□ -0.8
HSPG2P98160 MAGEA5-201ENST00000446757 942 ntBASIC10.06□□□□□ -0.8
HSPG2P98160 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC10.06□□□□□ -0.8
HSPG2P98160 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
HSPG2P98160 HNRNPA1P48-202ENST00000565308 961 ntBASIC10.06□□□□□ -0.8
HSPG2P98160 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC10.06□□□□□ -0.8
HSPG2P98160 SIGLEC29P-201ENST00000599873 1114 ntBASIC10.06□□□□□ -0.8
HSPG2P98160 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
HSPG2P98160 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC10.06□□□□□ -0.8
HSPG2P98160 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC10.06□□□□□ -0.8
HSPG2P98160 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC10.06□□□□□ -0.8
HSPG2P98160 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC10.06□□□□□ -0.8
HSPG2P98160 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC10.06□□□□□ -0.8
HSPG2P98160 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC10.06□□□□□ -0.8
HSPG2P98160 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC10.06□□□□□ -0.8
HSPG2P98160 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
HSPG2P98160 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
HSPG2P98160 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 CYP46A4P-201ENST00000414953 267 ntBASIC10.05□□□□□ -0.8
HSPG2P98160 AC012441.1-201ENST00000446669 685 ntBASIC10.05□□□□□ -0.8
HSPG2P98160 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC10.05□□□□□ -0.8
HSPG2P98160 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC10.05□□□□□ -0.8
HSPG2P98160 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 AC104982.3-201ENST00000581995 514 ntBASIC10.05□□□□□ -0.8
HSPG2P98160 SPIB-207ENST00000597855 564 ntTSL 4 BASIC10.05□□□□□ -0.8
HSPG2P98160 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC10.05□□□□□ -0.8
HSPG2P98160 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC10.05□□□□□ -0.8
HSPG2P98160 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 AC018635.2-201ENST00000608625 364 ntBASIC10.05□□□□□ -0.8
HSPG2P98160 AC079336.7-201ENST00000623428 1078 ntBASIC10.05□□□□□ -0.8
HSPG2P98160 RELA-227ENST00000615805 2236 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 PXK-206ENST00000463280 2825 ntTSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
HSPG2P98160 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 AC016694.1-201ENST00000434179 700 ntBASIC10.05□□□□□ -0.8
HSPG2P98160 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC10.05□□□□□ -0.8
HSPG2P98160 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC10.05□□□□□ -0.8
HSPG2P98160 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC10.05□□□□□ -0.8
HSPG2P98160 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 AC024267.1-201ENST00000582320 895 ntBASIC10.05□□□□□ -0.8
HSPG2P98160 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC10.05□□□□□ -0.8
HSPG2P98160 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC10.05□□□□□ -0.8
HSPG2P98160 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC10.05□□□□□ -0.8
HSPG2P98160 AC073352.2-201ENST00000609385 439 ntBASIC10.05□□□□□ -0.8
HSPG2P98160 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC10.05□□□□□ -0.8
HSPG2P98160 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms