Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CYGB-203ENST00000589145 788 ntTSL 3 BASIC11.75□□□□□ -0.53
PRKDCP78527 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC11.75□□□□□ -0.53
PRKDCP78527 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PRKDCP78527 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 AL136982.4-201ENST00000437689 1740 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 IDS-203ENST00000428056 1213 ntTSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 FAM197Y7-201ENST00000432892 766 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 NUP210P1-202ENST00000504322 710 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC11.74□□□□□ -0.53
PRKDCP78527 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 AL139011.1-202ENST00000642063 584 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PRKDCP78527 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PRKDCP78527 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
PRKDCP78527 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
PRKDCP78527 POM121L10P-201ENST00000436994 1285 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 RPL13P2-201ENST00000440687 659 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 APOA2-204ENST00000464492 530 ntTSL 3 BASIC11.74□□□□□ -0.53
PRKDCP78527 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC11.74□□□□□ -0.53
PRKDCP78527 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC11.74□□□□□ -0.53
PRKDCP78527 AP000346.4-201ENST00000614827 381 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 PC-204ENST00000524491 1714 ntTSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC11.74□□□□□ -0.53
PRKDCP78527 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC11.74□□□□□ -0.53
PRKDCP78527 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC11.74□□□□□ -0.53
PRKDCP78527 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
PRKDCP78527 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PRKDCP78527 AC078819.1-201ENST00000547454 765 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 AC012085.1-201ENST00000548270 765 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
PRKDCP78527 CU633904.3-201ENST00000624042 1029 ntBASIC11.74□□□□□ -0.53
PRKDCP78527 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC11.74□□□□□ -0.53
PRKDCP78527 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC11.73□□□□□ -0.53
PRKDCP78527 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC11.73□□□□□ -0.53
PRKDCP78527 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 SLC25A1P3-201ENST00000395415 828 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC11.73□□□□□ -0.53
PRKDCP78527 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC11.73□□□□□ -0.53
PRKDCP78527 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC11.73□□□□□ -0.53
PRKDCP78527 AC148477.9-201ENST00000623974 539 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC11.73□□□□□ -0.53
PRKDCP78527 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
PRKDCP78527 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
PRKDCP78527 AC108860.2-201ENST00000562760 2183 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC11.73□□□□□ -0.53
PRKDCP78527 AC044849.1-201ENST00000519737 1188 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 WT1-AS_6.1-201ENST00000614919 121 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 YRDCP1-201ENST00000621419 643 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC11.73□□□□□ -0.53
PRKDCP78527 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
PRKDCP78527 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC11.73□□□□□ -0.53
PRKDCP78527 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
PRKDCP78527 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
PRKDCP78527 SNX33P1-201ENST00000592116 1762 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC11.73□□□□□ -0.53
PRKDCP78527 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 KRTAP10-13P-201ENST00000412914 571 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC11.73□□□□□ -0.53
PRKDCP78527 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC11.73□□□□□ -0.53
PRKDCP78527 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC11.73□□□□□ -0.53
PRKDCP78527 HNRNPA1P48-202ENST00000565308 961 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 AC025279.2-201ENST00000569730 653 ntBASIC11.73□□□□□ -0.53
PRKDCP78527 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC11.73□□□□□ -0.53
PRKDCP78527 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
PRKDCP78527 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC11.73□□□□□ -0.53
PRKDCP78527 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC11.73□□□□□ -0.53
PRKDCP78527 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms