Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC14.11□□□□□ -0.15
USF1P22415 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
USF1P22415 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.1□□□□□ -0.15
USF1P22415 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.1□□□□□ -0.15
USF1P22415 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
USF1P22415 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
USF1P22415 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
USF1P22415 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.1□□□□□ -0.15
USF1P22415 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 AD000864.1-201ENST00000624076 2295 ntBASIC14.1□□□□□ -0.15
USF1P22415 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 HMGA1P7-201ENST00000406908 502 ntBASIC14.1□□□□□ -0.15
USF1P22415 BASP1P1-201ENST00000430708 665 ntBASIC14.1□□□□□ -0.15
USF1P22415 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.1□□□□□ -0.15
USF1P22415 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 AC069262.1-201ENST00000539058 672 ntBASIC14.1□□□□□ -0.15
USF1P22415 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.1□□□□□ -0.15
USF1P22415 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.1□□□□□ -0.15
USF1P22415 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.1□□□□□ -0.15
USF1P22415 AP001059.3-201ENST00000619053 235 ntBASIC14.1□□□□□ -0.15
USF1P22415 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
USF1P22415 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
USF1P22415 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USF1P22415 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.1□□□□□ -0.15
USF1P22415 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
USF1P22415 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.09□□□□□ -0.15
USF1P22415 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
USF1P22415 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.09□□□□□ -0.15
USF1P22415 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.09□□□□□ -0.15
USF1P22415 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
USF1P22415 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.09□□□□□ -0.15
USF1P22415 RBPMS2P1-201ENST00000437762 623 ntBASIC14.09□□□□□ -0.15
USF1P22415 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.09□□□□□ -0.15
USF1P22415 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.09□□□□□ -0.15
USF1P22415 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.09□□□□□ -0.15
USF1P22415 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.09□□□□□ -0.15
USF1P22415 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.09□□□□□ -0.15
USF1P22415 KRT8P23-201ENST00000560090 1207 ntBASIC14.09□□□□□ -0.15
USF1P22415 AC138761.1-201ENST00000584393 385 ntBASIC14.09□□□□□ -0.15
USF1P22415 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms