Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.69■□□□□ 0.1
COL5A1P20908 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.69■□□□□ 0.1
COL5A1P20908 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.69■□□□□ 0.1
COL5A1P20908 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.69■□□□□ 0.1
COL5A1P20908 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL5A1P20908 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.69■□□□□ 0.1
COL5A1P20908 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.69■□□□□ 0.1
COL5A1P20908 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.69■□□□□ 0.1
COL5A1P20908 AC025048.3-201ENST00000590609 569 ntBASIC15.69■□□□□ 0.1
COL5A1P20908 AC010319.3-201ENST00000597028 470 ntBASIC15.69■□□□□ 0.1
COL5A1P20908 AL512343.1-201ENST00000605837 169 ntBASIC15.69■□□□□ 0.1
COL5A1P20908 AC005702.4-201ENST00000618393 416 ntBASIC15.69■□□□□ 0.1
COL5A1P20908 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.69■□□□□ 0.1
COL5A1P20908 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 GPAA1P2-202ENST00000606848 1787 ntBASIC15.69■□□□□ 0.1
COL5A1P20908 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL5A1P20908 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
COL5A1P20908 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL5A1P20908 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.68■□□□□ 0.1
COL5A1P20908 AL139010.1-201ENST00000454878 894 ntBASIC15.68■□□□□ 0.1
COL5A1P20908 AC092658.1-201ENST00000505836 891 ntBASIC15.68■□□□□ 0.1
COL5A1P20908 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.68■□□□□ 0.1
COL5A1P20908 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.68■□□□□ 0.1
COL5A1P20908 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.68■□□□□ 0.1
COL5A1P20908 CLK3P2-201ENST00000427566 1453 ntBASIC15.68■□□□□ 0.1
COL5A1P20908 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.68■□□□□ 0.1
COL5A1P20908 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
COL5A1P20908 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.68■□□□□ 0.1
COL5A1P20908 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL5A1P20908 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.68■□□□□ 0.1
COL5A1P20908 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL5A1P20908 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.68■□□□□ 0.1
COL5A1P20908 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL5A1P20908 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.68■□□□□ 0.1
COL5A1P20908 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL5A1P20908 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
COL5A1P20908 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 ANKRD19P-201ENST00000338192 862 ntBASIC15.67■□□□□ 0.1
COL5A1P20908 FAM86MP-201ENST00000340703 885 ntBASIC15.67■□□□□ 0.1
COL5A1P20908 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
COL5A1P20908 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.67■□□□□ 0.1
COL5A1P20908 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.67■□□□□ 0.1
COL5A1P20908 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 AL365330.1-201ENST00000607459 531 ntBASIC15.67■□□□□ 0.1
COL5A1P20908 RPSAP52-203ENST00000622976 1023 ntBASIC15.67■□□□□ 0.1
COL5A1P20908 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
COL5A1P20908 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms