Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 MGST3-203ENST00000367885 680 ntTSL 2 BASIC10.15□□□□□ -0.78
APOBP04114 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC10.15□□□□□ -0.78
APOBP04114 TARDBPP1-201ENST00000442013 1203 ntBASIC10.15□□□□□ -0.78
APOBP04114 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC10.15□□□□□ -0.78
APOBP04114 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 AC024267.1-201ENST00000582320 895 ntBASIC10.15□□□□□ -0.78
APOBP04114 AC020914.3-201ENST00000594712 304 ntBASIC10.15□□□□□ -0.78
APOBP04114 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC10.15□□□□□ -0.78
APOBP04114 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
APOBP04114 AL021920.2-201ENST00000624828 1351 ntBASIC10.15□□□□□ -0.78
APOBP04114 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC10.15□□□□□ -0.78
APOBP04114 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC10.15□□□□□ -0.78
APOBP04114 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC10.15□□□□□ -0.78
APOBP04114 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC10.15□□□□□ -0.78
APOBP04114 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC10.15□□□□□ -0.79
APOBP04114 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC10.15□□□□□ -0.79
APOBP04114 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
APOBP04114 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
APOBP04114 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC10.15□□□□□ -0.79
APOBP04114 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC10.15□□□□□ -0.79
APOBP04114 BRI3BPP1-201ENST00000594224 787 ntBASIC10.15□□□□□ -0.79
APOBP04114 AC015967.2-201ENST00000624092 234 ntBASIC10.15□□□□□ -0.79
APOBP04114 AC006435.4-201ENST00000625037 234 ntBASIC10.15□□□□□ -0.79
APOBP04114 AL356737.1-201ENST00000634391 234 ntBASIC10.15□□□□□ -0.79
APOBP04114 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC10.15□□□□□ -0.79
APOBP04114 AL512652.2-201ENST00000625156 1716 ntBASIC10.15□□□□□ -0.79
APOBP04114 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
APOBP04114 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC10.15□□□□□ -0.79
APOBP04114 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
APOBP04114 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC10.15□□□□□ -0.79
APOBP04114 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
APOBP04114 CYP4F24P-201ENST00000586049 1580 ntBASIC10.15□□□□□ -0.79
APOBP04114 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 AC074338.1-201ENST00000416825 156 ntBASIC10.14□□□□□ -0.79
APOBP04114 HINT2P1-201ENST00000419438 481 ntBASIC10.14□□□□□ -0.79
APOBP04114 ACTG1P3-201ENST00000431775 1114 ntBASIC10.14□□□□□ -0.79
APOBP04114 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC10.14□□□□□ -0.79
APOBP04114 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC10.14□□□□□ -0.79
APOBP04114 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC10.14□□□□□ -0.79
APOBP04114 AC097724.1-201ENST00000609581 426 ntBASIC10.14□□□□□ -0.79
APOBP04114 AL008638.5-201ENST00000623814 1298 ntBASIC10.14□□□□□ -0.79
APOBP04114 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
APOBP04114 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC10.14□□□□□ -0.79
APOBP04114 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC10.14□□□□□ -0.79
APOBP04114 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC10.14□□□□□ -0.79
APOBP04114 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC10.14□□□□□ -0.79
APOBP04114 AC016629.1-201ENST00000596579 586 ntBASIC10.14□□□□□ -0.79
APOBP04114 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC10.14□□□□□ -0.79
APOBP04114 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 AL442647.2-201ENST00000429864 857 ntBASIC10.14□□□□□ -0.79
APOBP04114 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC10.14□□□□□ -0.79
APOBP04114 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
APOBP04114 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC10.14□□□□□ -0.79
APOBP04114 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
APOBP04114 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC10.14□□□□□ -0.79
APOBP04114 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
APOBP04114 ZBTB12BP-201ENST00000314232 1122 ntBASIC10.14□□□□□ -0.79
APOBP04114 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
APOBP04114 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC10.14□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms