Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 GGT3P-204ENST00000453783 1664 ntBASIC15.25■□□□□ 0.03
CLN6Q9NWW5 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AL845331.1-201ENST00000424978 1190 ntBASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 KRT18P57-201ENST00000443599 1254 ntBASIC15.25■□□□□ 0.03
CLN6Q9NWW5 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AC013467.2-201ENST00000605472 835 ntBASIC15.25■□□□□ 0.03
CLN6Q9NWW5 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AC073592.5-201ENST00000624854 528 ntBASIC15.25■□□□□ 0.03
CLN6Q9NWW5 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AC010491.1-201ENST00000563101 2797 ntBASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AC006277.1-201ENST00000624348 1610 ntBASIC15.25■□□□□ 0.03
CLN6Q9NWW5 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.25■□□□□ 0.03
CLN6Q9NWW5 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 AC006449.6-201ENST00000612330 2296 ntBASIC15.24■□□□□ 0.03
CLN6Q9NWW5 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 ACTG1P4-201ENST00000425123 1122 ntBASIC15.24■□□□□ 0.03
CLN6Q9NWW5 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 IGHV3-41-201ENST00000613121 348 ntBASIC15.24■□□□□ 0.03
CLN6Q9NWW5 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 AC144831.1-201ENST00000573312 2656 ntBASIC15.24■□□□□ 0.03
CLN6Q9NWW5 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLN6Q9NWW5 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLN6Q9NWW5 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.23■□□□□ 0.03
CLN6Q9NWW5 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLN6Q9NWW5 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLN6Q9NWW5 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CLN6Q9NWW5 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms