Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 AC105021.1-202ENST00000570572 669 ntBASIC17.03■□□□□ 0.32
TDP1Q9NUW8 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 TEX28P1-201ENST00000613479 1221 ntBASIC17.02■□□□□ 0.32
TDP1Q9NUW8 TEX28P2-201ENST00000617764 1221 ntBASIC17.02■□□□□ 0.32
TDP1Q9NUW8 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
TDP1Q9NUW8 AC060834.1-201ENST00000443027 2032 ntBASIC17.02■□□□□ 0.32
TDP1Q9NUW8 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TDP1Q9NUW8 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 RPL37AP1-201ENST00000412502 279 ntBASIC17.01■□□□□ 0.31
TDP1Q9NUW8 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 AC093724.1-201ENST00000448659 1027 ntBASIC17.01■□□□□ 0.31
TDP1Q9NUW8 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 BANF1P1-201ENST00000553684 263 ntBASIC17.01■□□□□ 0.31
TDP1Q9NUW8 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TDP1Q9NUW8 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TDP1Q9NUW8 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
TDP1Q9NUW8 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17■□□□□ 0.31
TDP1Q9NUW8 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17■□□□□ 0.31
TDP1Q9NUW8 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TDP1Q9NUW8 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms