Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 GPALPP1-207ENST00000611650 899 ntBASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 AL513477.1-201ENST00000602865 2407 ntBASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 KRT8P39-201ENST00000396270 1433 ntBASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
TRIM39Q9HCM9 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AL671710.1-201ENST00000610245 2349 ntBASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AC021097.1-201ENST00000607902 574 ntBASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 SNX33P1-201ENST00000592116 1762 ntBASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM39Q9HCM9 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 AL671277.1-201ENST00000429656 993 ntBASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 FAM86C2P-203ENST00000528684 1004 ntBASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 AC099522.2-201ENST00000607001 744 ntBASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms