Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 AP001094.4-201ENST00000579008 2176 ntBASIC20.52■□□□□ 0.88
SYNE4Q8N205 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 VMO1-203ENST00000416307 712 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 AL139011.1-202ENST00000642063 584 ntBASIC20.52■□□□□ 0.88
SYNE4Q8N205 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNE4Q8N205 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE4Q8N205 AL589702.1-201ENST00000641229 1509 ntBASIC20.52■□□□□ 0.87
SYNE4Q8N205 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE4Q8N205 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE4Q8N205 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE4Q8N205 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE4Q8N205 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE4Q8N205 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
SYNE4Q8N205 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE4Q8N205 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 AL512361.1-201ENST00000554200 418 ntBASIC20.51■□□□□ 0.87
SYNE4Q8N205 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 GPAA1P2-202ENST00000606848 1787 ntBASIC20.51■□□□□ 0.87
SYNE4Q8N205 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE4Q8N205 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SYNE4Q8N205 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE4Q8N205 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
SYNE4Q8N205 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE4Q8N205 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE4Q8N205 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE4Q8N205 AC007541.1-201ENST00000570282 1469 ntBASIC20.5■□□□□ 0.87
SYNE4Q8N205 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE4Q8N205 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE4Q8N205 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.5■□□□□ 0.87
SYNE4Q8N205 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE4Q8N205 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE4Q8N205 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms