Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
USP54Q70EL1 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC21.74■■□□□ 1.07
USP54Q70EL1 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
USP54Q70EL1 RPL13P2-201ENST00000440687 659 ntBASIC21.74■■□□□ 1.07
USP54Q70EL1 POU5F1P6-201ENST00000466990 990 ntBASIC21.74■■□□□ 1.07
USP54Q70EL1 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC21.74■■□□□ 1.07
USP54Q70EL1 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC21.74■■□□□ 1.07
USP54Q70EL1 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC21.74■■□□□ 1.07
USP54Q70EL1 AC010319.3-201ENST00000597028 470 ntBASIC21.74■■□□□ 1.07
USP54Q70EL1 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
USP54Q70EL1 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.74■■□□□ 1.07
USP54Q70EL1 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
USP54Q70EL1 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.74■■□□□ 1.07
USP54Q70EL1 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
USP54Q70EL1 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
USP54Q70EL1 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USP54Q70EL1 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
USP54Q70EL1 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP54Q70EL1 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC21.73■■□□□ 1.07
USP54Q70EL1 AC074338.1-201ENST00000416825 156 ntBASIC21.73■■□□□ 1.07
USP54Q70EL1 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC21.73■■□□□ 1.07
USP54Q70EL1 AC124283.3-201ENST00000570869 594 ntBASIC21.73■■□□□ 1.07
USP54Q70EL1 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC21.73■■□□□ 1.07
USP54Q70EL1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
USP54Q70EL1 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP54Q70EL1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.73■■□□□ 1.07
USP54Q70EL1 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP54Q70EL1 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC21.73■■□□□ 1.07
USP54Q70EL1 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP54Q70EL1 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USP54Q70EL1 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
USP54Q70EL1 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC21.73■■□□□ 1.07
USP54Q70EL1 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 NSL1-201ENST00000366976 722 ntTSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 AL442647.2-201ENST00000429864 857 ntBASIC21.72■■□□□ 1.07
USP54Q70EL1 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC21.72■■□□□ 1.07
USP54Q70EL1 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
USP54Q70EL1 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC21.72■■□□□ 1.07
USP54Q70EL1 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 AMT-232ENST00000636199 1546 ntTSL 5 BASIC21.72■■□□□ 1.07
USP54Q70EL1 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 KRT8P37-201ENST00000451609 1420 ntBASIC21.72■■□□□ 1.07
USP54Q70EL1 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC21.72■■□□□ 1.07
USP54Q70EL1 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
USP54Q70EL1 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC21.72■■□□□ 1.07
USP54Q70EL1 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC21.72■■□□□ 1.07
USP54Q70EL1 HNRNPUP1-201ENST00000554987 333 ntBASIC21.72■■□□□ 1.07
USP54Q70EL1 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC21.72■■□□□ 1.07
USP54Q70EL1 MIR5189-201ENST00000577370 114 ntBASIC21.72■■□□□ 1.07
USP54Q70EL1 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC21.72■■□□□ 1.07
USP54Q70EL1 MIR8072-201ENST00000614241 80 ntBASIC21.72■■□□□ 1.07
USP54Q70EL1 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC21.72■■□□□ 1.07
USP54Q70EL1 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.72■■□□□ 1.07
USP54Q70EL1 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP54Q70EL1 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USP54Q70EL1 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC21.71■■□□□ 1.07
USP54Q70EL1 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
USP54Q70EL1 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC21.71■■□□□ 1.07
USP54Q70EL1 RN7SL752P-201ENST00000463779 287 ntBASIC21.71■■□□□ 1.07
USP54Q70EL1 AC011495.1-201ENST00000498085 584 ntBASIC21.71■■□□□ 1.07
USP54Q70EL1 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC21.71■■□□□ 1.07
USP54Q70EL1 AL033527.4-201ENST00000641026 673 ntBASIC21.71■■□□□ 1.07
USP54Q70EL1 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.71■■□□□ 1.07
USP54Q70EL1 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP54Q70EL1 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC21.7■■□□□ 1.07
USP54Q70EL1 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
USP54Q70EL1 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC21.7■■□□□ 1.06
USP54Q70EL1 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC21.7■■□□□ 1.06
USP54Q70EL1 HIST1H2BPS3-201ENST00000419683 341 ntBASIC21.7■■□□□ 1.06
USP54Q70EL1 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms