Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 AC092068.3-201ENST00000587894 2016 ntBASIC17.64■□□□□ 0.41
USP41Q3LFD5 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 AC004890.2-204ENST00000481968 304 ntBASIC17.63■□□□□ 0.41
USP41Q3LFD5 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 AL590560.3-201ENST00000623350 461 ntBASIC17.63■□□□□ 0.41
USP41Q3LFD5 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 AC100757.3-201ENST00000622361 1406 ntBASIC17.63■□□□□ 0.41
USP41Q3LFD5 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP41Q3LFD5 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.63■□□□□ 0.41
USP41Q3LFD5 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 FAM220BP-201ENST00000377689 816 ntBASIC17.62■□□□□ 0.41
USP41Q3LFD5 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 AC015922.1-201ENST00000421102 1152 ntBASIC17.62■□□□□ 0.41
USP41Q3LFD5 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 AF228730.6-201ENST00000641497 218 ntBASIC17.62■□□□□ 0.41
USP41Q3LFD5 AC084121.3-201ENST00000641716 218 ntBASIC17.62■□□□□ 0.41
USP41Q3LFD5 AC105233.6-201ENST00000642093 218 ntBASIC17.62■□□□□ 0.41
USP41Q3LFD5 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.62■□□□□ 0.41
USP41Q3LFD5 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP41Q3LFD5 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 AL353705.2-201ENST00000428243 662 ntBASIC17.61■□□□□ 0.41
USP41Q3LFD5 AC098859.1-201ENST00000502915 1238 ntBASIC17.61■□□□□ 0.41
USP41Q3LFD5 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 AL035456.1-201ENST00000456064 1369 ntBASIC17.61■□□□□ 0.41
USP41Q3LFD5 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP41Q3LFD5 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms