Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC10.08□□□□□ -0.8
HSPG2P98160 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC10.08□□□□□ -0.8
HSPG2P98160 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC10.08□□□□□ -0.8
HSPG2P98160 AC093724.1-201ENST00000448659 1027 ntBASIC10.08□□□□□ -0.8
HSPG2P98160 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC10.08□□□□□ -0.8
HSPG2P98160 MIR6069-201ENST00000620069 79 ntBASIC10.08□□□□□ -0.8
HSPG2P98160 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 AL136982.4-201ENST00000437689 1740 ntBASIC10.08□□□□□ -0.8
HSPG2P98160 MADD-208ENST00000405573 1823 ntTSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC10.08□□□□□ -0.8
HSPG2P98160 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
HSPG2P98160 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
HSPG2P98160 HLA-DQB2-229ENST00000411527 1059 ntBASIC10.08□□□□□ -0.8
HSPG2P98160 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC10.08□□□□□ -0.8
HSPG2P98160 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC10.08□□□□□ -0.8
HSPG2P98160 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC10.08□□□□□ -0.8
HSPG2P98160 AL451050.2-201ENST00000606967 682 ntBASIC10.08□□□□□ -0.8
HSPG2P98160 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 INTS4P2-202ENST00000614726 2019 ntBASIC10.08□□□□□ -0.8
HSPG2P98160 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC10.08□□□□□ -0.8
HSPG2P98160 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC10.08□□□□□ -0.8
HSPG2P98160 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC10.07□□□□□ -0.8
HSPG2P98160 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
HSPG2P98160 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC10.07□□□□□ -0.8
HSPG2P98160 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 MIR4741-201ENST00000579822 90 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 RN7SL574P-201ENST00000581512 297 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC10.07□□□□□ -0.8
HSPG2P98160 AL049840.4-201ENST00000602422 811 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
HSPG2P98160 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC10.07□□□□□ -0.8
HSPG2P98160 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
HSPG2P98160 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC10.07□□□□□ -0.8
HSPG2P98160 FTLP1-201ENST00000449155 526 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 AC106760.1-201ENST00000508690 800 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC10.07□□□□□ -0.8
HSPG2P98160 AC078819.1-201ENST00000547454 765 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 AC012085.1-201ENST00000548270 765 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
HSPG2P98160 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC10.07□□□□□ -0.8
HSPG2P98160 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC10.07□□□□□ -0.8
HSPG2P98160 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC10.07□□□□□ -0.8
HSPG2P98160 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 AL355312.1-201ENST00000407115 2176 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
HSPG2P98160 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC10.07□□□□□ -0.8
HSPG2P98160 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
HSPG2P98160 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC10.07□□□□□ -0.8
HSPG2P98160 AC025279.2-201ENST00000569730 653 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 AL133499.1-201ENST00000596207 608 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 AC244452.3-201ENST00000636814 210 ntBASIC10.07□□□□□ -0.8
HSPG2P98160 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
HSPG2P98160 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC10.07□□□□□ -0.8
HSPG2P98160 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC10.07□□□□□ -0.8
HSPG2P98160 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC10.07□□□□□ -0.8
HSPG2P98160 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC10.07□□□□□ -0.8
HSPG2P98160 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC10.07□□□□□ -0.8
HSPG2P98160 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
HSPG2P98160 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC10.07□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms