Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CTCFP49711 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
CTCFP49711 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.16■□□□□ 0.66
CTCFP49711 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CTCFP49711 AC046185.3-201ENST00000623228 1824 ntBASIC19.16■□□□□ 0.66
CTCFP49711 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTCFP49711 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.15■□□□□ 0.66
CTCFP49711 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTCFP49711 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTCFP49711 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CTCFP49711 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CTCFP49711 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
CTCFP49711 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.15■□□□□ 0.66
CTCFP49711 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
CTCFP49711 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CTCFP49711 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTCFP49711 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTCFP49711 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CTCFP49711 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CTCFP49711 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.15■□□□□ 0.66
CTCFP49711 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC19.15■□□□□ 0.66
CTCFP49711 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.15■□□□□ 0.66
CTCFP49711 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CTCFP49711 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.15■□□□□ 0.66
CTCFP49711 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.15■□□□□ 0.66
CTCFP49711 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.15■□□□□ 0.66
CTCFP49711 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CTCFP49711 RRP7BP-205ENST00000566851 833 ntBASIC19.15■□□□□ 0.66
CTCFP49711 SPCS2P2-201ENST00000603270 608 ntBASIC19.15■□□□□ 0.66
CTCFP49711 AC004461.2-201ENST00000629517 803 ntBASIC19.15■□□□□ 0.66
CTCFP49711 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.15■□□□□ 0.66
CTCFP49711 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTCFP49711 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
CTCFP49711 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.15■□□□□ 0.66
CTCFP49711 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CTCFP49711 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CTCFP49711 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.14■□□□□ 0.66
CTCFP49711 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CTCFP49711 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.14■□□□□ 0.65
CTCFP49711 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
CTCFP49711 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CTCFP49711 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 FAM220BP-201ENST00000377689 816 ntBASIC19.14■□□□□ 0.65
CTCFP49711 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.14■□□□□ 0.65
CTCFP49711 RPL7P3-201ENST00000441388 714 ntBASIC19.14■□□□□ 0.65
CTCFP49711 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC19.14■□□□□ 0.65
CTCFP49711 SERBP1P3-201ENST00000459980 809 ntBASIC19.14■□□□□ 0.65
CTCFP49711 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC19.14■□□□□ 0.65
CTCFP49711 FTH1-202ENST00000526640 786 ntTSL 2 BASIC19.14■□□□□ 0.65
CTCFP49711 MAX-210ENST00000555419 765 ntTSL 5 BASIC19.14■□□□□ 0.65
CTCFP49711 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.14■□□□□ 0.65
CTCFP49711 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.14■□□□□ 0.65
CTCFP49711 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 AC068880.1-201ENST00000507289 2297 ntBASIC19.14■□□□□ 0.65
CTCFP49711 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTCFP49711 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.14■□□□□ 0.65
CTCFP49711 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
CTCFP49711 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.14■□□□□ 0.65
CTCFP49711 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.13■□□□□ 0.65
CTCFP49711 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.13■□□□□ 0.65
CTCFP49711 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 YBX1P6-201ENST00000442962 1002 ntBASIC19.13■□□□□ 0.65
CTCFP49711 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.13■□□□□ 0.65
CTCFP49711 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 AC105129.2-201ENST00000559536 390 ntBASIC19.13■□□□□ 0.65
CTCFP49711 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC19.13■□□□□ 0.65
CTCFP49711 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.13■□□□□ 0.65
CTCFP49711 MIR5572-201ENST00000583188 137 ntBASIC19.13■□□□□ 0.65
CTCFP49711 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 AL022328.3-201ENST00000607943 679 ntBASIC19.13■□□□□ 0.65
CTCFP49711 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 MIR7845-201ENST00000618396 99 ntBASIC19.13■□□□□ 0.65
CTCFP49711 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC19.13■□□□□ 0.65
CTCFP49711 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.13■□□□□ 0.65
CTCFP49711 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.13■□□□□ 0.65
CTCFP49711 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CTCFP49711 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.13■□□□□ 0.65
CTCFP49711 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CTCFP49711 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.13■□□□□ 0.65
CTCFP49711 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms