Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.57■□□□□ 0.88
COL5A3P25940 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
COL5A3P25940 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC20.57■□□□□ 0.88
COL5A3P25940 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC20.57■□□□□ 0.88
COL5A3P25940 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC20.57■□□□□ 0.88
COL5A3P25940 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL5A3P25940 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.57■□□□□ 0.88
COL5A3P25940 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL5A3P25940 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 HNRNPA1P48-201ENST00000562726 1377 ntBASIC20.57■□□□□ 0.88
COL5A3P25940 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A3P25940 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.57■□□□□ 0.88
COL5A3P25940 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL5A3P25940 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
COL5A3P25940 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A3P25940 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A3P25940 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A3P25940 MIR4538-201ENST00000581377 78 ntBASIC20.56■□□□□ 0.88
COL5A3P25940 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.56■□□□□ 0.88
COL5A3P25940 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.56■□□□□ 0.88
COL5A3P25940 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
COL5A3P25940 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL5A3P25940 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
COL5A3P25940 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
COL5A3P25940 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A3P25940 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL5A3P25940 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A3P25940 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A3P25940 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC20.56■□□□□ 0.88
COL5A3P25940 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC20.56■□□□□ 0.88
COL5A3P25940 AC099548.2-209ENST00000480264 625 ntBASIC20.56■□□□□ 0.88
COL5A3P25940 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A3P25940 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A3P25940 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A3P25940 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL5A3P25940 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A3P25940 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A3P25940 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A3P25940 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A3P25940 NEFHP1-201ENST00000412845 2629 ntBASIC20.55■□□□□ 0.88
COL5A3P25940 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A3P25940 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A3P25940 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A3P25940 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A3P25940 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL5A3P25940 MPV17-206ENST00000402722 827 ntTSL 3 BASIC20.55■□□□□ 0.88
COL5A3P25940 FO393414.2-201ENST00000405153 598 ntBASIC20.55■□□□□ 0.88
COL5A3P25940 CTBP2P5-201ENST00000454986 1264 ntBASIC20.55■□□□□ 0.88
COL5A3P25940 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.55■□□□□ 0.88
COL5A3P25940 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A3P25940 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.55■□□□□ 0.88
COL5A3P25940 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A3P25940 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC20.55■□□□□ 0.88
COL5A3P25940 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A3P25940 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A3P25940 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A3P25940 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A3P25940 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
COL5A3P25940 INTS4P2-202ENST00000614726 2019 ntBASIC20.54■□□□□ 0.88
COL5A3P25940 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC20.54■□□□□ 0.88
COL5A3P25940 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL5A3P25940 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
COL5A3P25940 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC20.54■□□□□ 0.88
COL5A3P25940 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
COL5A3P25940 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL5A3P25940 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A3P25940 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC20.54■□□□□ 0.88
COL5A3P25940 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.54■□□□□ 0.88
COL5A3P25940 USB1-202ENST00000423271 1217 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A3P25940 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.54■□□□□ 0.88
COL5A3P25940 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms