Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 AL512361.1-201ENST00000554200 418 ntBASIC21.71■■□□□ 1.07
COL3A1P02461 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.71■■□□□ 1.07
COL3A1P02461 AL079307.3-201ENST00000556114 283 ntBASIC21.71■■□□□ 1.07
COL3A1P02461 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.71■■□□□ 1.07
COL3A1P02461 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.71■■□□□ 1.07
COL3A1P02461 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL3A1P02461 AJ011932.1-201ENST00000621707 465 ntBASIC21.71■■□□□ 1.07
COL3A1P02461 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
COL3A1P02461 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
COL3A1P02461 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC21.7■■□□□ 1.06
COL3A1P02461 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC21.7■■□□□ 1.06
COL3A1P02461 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.7■■□□□ 1.06
COL3A1P02461 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.7■■□□□ 1.06
COL3A1P02461 PRORSD1P-202ENST00000563365 2154 ntBASIC21.7■■□□□ 1.06
COL3A1P02461 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 AL136982.4-201ENST00000437689 1740 ntBASIC21.7■■□□□ 1.06
COL3A1P02461 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC21.7■■□□□ 1.06
COL3A1P02461 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.7■■□□□ 1.06
COL3A1P02461 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
COL3A1P02461 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC21.7■■□□□ 1.06
COL3A1P02461 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.7■■□□□ 1.06
COL3A1P02461 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
COL3A1P02461 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.7■■□□□ 1.06
COL3A1P02461 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC21.7■■□□□ 1.06
COL3A1P02461 AC010336.2-201ENST00000564226 506 ntBASIC21.7■■□□□ 1.06
COL3A1P02461 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.7■■□□□ 1.06
COL3A1P02461 AC011467.4-201ENST00000594891 528 ntBASIC21.7■■□□□ 1.06
COL3A1P02461 AL365330.1-201ENST00000607459 531 ntBASIC21.7■■□□□ 1.06
COL3A1P02461 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
COL3A1P02461 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
COL3A1P02461 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL3A1P02461 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC21.7■■□□□ 1.06
COL3A1P02461 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
COL3A1P02461 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC21.69■■□□□ 1.06
COL3A1P02461 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
COL3A1P02461 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL3A1P02461 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL3A1P02461 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.69■■□□□ 1.06
COL3A1P02461 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC21.69■■□□□ 1.06
COL3A1P02461 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL3A1P02461 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC21.69■■□□□ 1.06
COL3A1P02461 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC21.69■■□□□ 1.06
COL3A1P02461 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL3A1P02461 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC21.69■■□□□ 1.06
COL3A1P02461 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC21.69■■□□□ 1.06
COL3A1P02461 MTHFR-217ENST00000641820 1569 ntBASIC21.69■■□□□ 1.06
COL3A1P02461 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC21.68■■□□□ 1.06
COL3A1P02461 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
COL3A1P02461 FZD10-202ENST00000539839 3282 ntBASIC21.68■■□□□ 1.06
COL3A1P02461 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.68■■□□□ 1.06
COL3A1P02461 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
COL3A1P02461 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.68■■□□□ 1.06
COL3A1P02461 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.68■■□□□ 1.06
COL3A1P02461 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.68■■□□□ 1.06
COL3A1P02461 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
COL3A1P02461 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.68■■□□□ 1.06
COL3A1P02461 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC21.68■■□□□ 1.06
COL3A1P02461 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC21.68■■□□□ 1.06
COL3A1P02461 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL3A1P02461 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC21.68■■□□□ 1.06
COL3A1P02461 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms