Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.04■□□□□ 0.48
RNF40O75150 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.04■□□□□ 0.48
RNF40O75150 AC004967.1-201ENST00000453589 447 ntBASIC18.04■□□□□ 0.48
RNF40O75150 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.04■□□□□ 0.48
RNF40O75150 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF40O75150 AC002347.1-201ENST00000569543 541 ntBASIC18.04■□□□□ 0.48
RNF40O75150 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 AC006557.2-201ENST00000592985 1240 ntBASIC18.04■□□□□ 0.48
RNF40O75150 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RNF40O75150 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
RNF40O75150 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 AC023274.1-201ENST00000418278 595 ntBASIC18.03■□□□□ 0.48
RNF40O75150 AC096633.1-201ENST00000422446 749 ntBASIC18.03■□□□□ 0.48
RNF40O75150 AC004832.2-201ENST00000426397 482 ntBASIC18.03■□□□□ 0.48
RNF40O75150 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.03■□□□□ 0.48
RNF40O75150 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.03■□□□□ 0.48
RNF40O75150 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF40O75150 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.03■□□□□ 0.48
RNF40O75150 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 AC073592.4-201ENST00000623827 446 ntBASIC18.03■□□□□ 0.48
RNF40O75150 AC005593.1-201ENST00000624894 515 ntBASIC18.03■□□□□ 0.48
RNF40O75150 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF40O75150 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RNF40O75150 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF40O75150 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF40O75150 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.03■□□□□ 0.48
RNF40O75150 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.02■□□□□ 0.48
RNF40O75150 AC022898.2-201ENST00000616822 1312 ntBASIC18.02■□□□□ 0.48
RNF40O75150 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.02■□□□□ 0.48
RNF40O75150 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
RNF40O75150 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.02■□□□□ 0.48
RNF40O75150 PMS2P2-201ENST00000425039 1128 ntBASIC18.02■□□□□ 0.48
RNF40O75150 KRT18P27-201ENST00000427733 1299 ntBASIC18.02■□□□□ 0.48
RNF40O75150 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.02■□□□□ 0.48
RNF40O75150 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.02■□□□□ 0.48
RNF40O75150 AC122714.2-201ENST00000502787 707 ntBASIC18.02■□□□□ 0.48
RNF40O75150 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
RNF40O75150 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.02■□□□□ 0.48
RNF40O75150 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.02■□□□□ 0.48
RNF40O75150 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 AD001527.2-201ENST00000622994 785 ntBASIC18.02■□□□□ 0.48
RNF40O75150 AC079781.4-201ENST00000641908 219 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms