Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC20.67■□□□□ 0.9
CACNA1FO60840 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CACNA1FO60840 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CACNA1FO60840 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.67■□□□□ 0.9
CACNA1FO60840 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.67■□□□□ 0.9
CACNA1FO60840 ZNF890P-202ENST00000530367 1156 ntBASIC20.67■□□□□ 0.9
CACNA1FO60840 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.67■□□□□ 0.9
CACNA1FO60840 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.67■□□□□ 0.9
CACNA1FO60840 AL136982.4-201ENST00000437689 1740 ntBASIC20.67■□□□□ 0.9
CACNA1FO60840 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC20.67■□□□□ 0.9
CACNA1FO60840 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CACNA1FO60840 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.67■□□□□ 0.9
CACNA1FO60840 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CACNA1FO60840 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CACNA1FO60840 HNRNPFP1-201ENST00000391730 1133 ntBASIC20.66■□□□□ 0.9
CACNA1FO60840 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CACNA1FO60840 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.66■□□□□ 0.9
CACNA1FO60840 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC20.66■□□□□ 0.9
CACNA1FO60840 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CACNA1FO60840 AC011467.4-201ENST00000594891 528 ntBASIC20.66■□□□□ 0.9
CACNA1FO60840 AC003101.2-201ENST00000612557 442 ntBASIC20.66■□□□□ 0.9
CACNA1FO60840 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CACNA1FO60840 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.66■□□□□ 0.9
CACNA1FO60840 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC20.66■□□□□ 0.9
CACNA1FO60840 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CACNA1FO60840 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CACNA1FO60840 CETN4P-206ENST00000642099 2168 ntBASIC20.66■□□□□ 0.9
CACNA1FO60840 MIR648-201ENST00000385046 94 ntBASIC20.66■□□□□ 0.9
CACNA1FO60840 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CACNA1FO60840 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.66■□□□□ 0.9
CACNA1FO60840 AQP6-203ENST00000551733 849 ntTSL 3 BASIC20.66■□□□□ 0.9
CACNA1FO60840 AL079307.3-201ENST00000556114 283 ntBASIC20.66■□□□□ 0.9
CACNA1FO60840 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.66■□□□□ 0.9
CACNA1FO60840 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.66■□□□□ 0.9
CACNA1FO60840 SPDYE12P-201ENST00000618416 771 ntBASIC20.66■□□□□ 0.9
CACNA1FO60840 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CACNA1FO60840 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CACNA1FO60840 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CACNA1FO60840 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CACNA1FO60840 TREML5P-201ENST00000421694 576 ntBASIC20.65■□□□□ 0.9
CACNA1FO60840 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.65■□□□□ 0.9
CACNA1FO60840 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.65■□□□□ 0.9
CACNA1FO60840 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
CACNA1FO60840 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CACNA1FO60840 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CACNA1FO60840 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
CACNA1FO60840 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC20.65■□□□□ 0.9
CACNA1FO60840 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CACNA1FO60840 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CACNA1FO60840 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CACNA1FO60840 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.65■□□□□ 0.9
CACNA1FO60840 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CACNA1FO60840 AC055876.3-201ENST00000431496 288 ntBASIC20.65■□□□□ 0.9
CACNA1FO60840 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC20.65■□□□□ 0.9
CACNA1FO60840 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.65■□□□□ 0.9
CACNA1FO60840 RN7SL828P-201ENST00000607615 303 ntBASIC20.65■□□□□ 0.9
CACNA1FO60840 AC138649.4-201ENST00000612222 287 ntBASIC20.65■□□□□ 0.9
CACNA1FO60840 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.64■□□□□ 0.9
CACNA1FO60840 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.64■□□□□ 0.89
CACNA1FO60840 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
CACNA1FO60840 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20.64■□□□□ 0.89
CACNA1FO60840 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CACNA1FO60840 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CACNA1FO60840 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.64■□□□□ 0.89
CACNA1FO60840 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.64■□□□□ 0.89
CACNA1FO60840 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC20.64■□□□□ 0.89
CACNA1FO60840 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1FO60840 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 AC105021.1-202ENST00000570572 669 ntBASIC20.63■□□□□ 0.89
CACNA1FO60840 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1FO60840 AL390754.1-201ENST00000619088 582 ntBASIC20.63■□□□□ 0.89
CACNA1FO60840 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1FO60840 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.63■□□□□ 0.89
CACNA1FO60840 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CACNA1FO60840 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms