Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDB2O43679 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LDB2O43679 MED15P5-201ENST00000423150 992 ntBASIC16.62■□□□□ 0.25
LDB2O43679 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.62■□□□□ 0.25
LDB2O43679 AC140658.5-201ENST00000438532 169 ntBASIC16.62■□□□□ 0.25
LDB2O43679 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LDB2O43679 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDB2O43679 AC109635.5-201ENST00000533593 962 ntBASIC16.62■□□□□ 0.25
LDB2O43679 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.62■□□□□ 0.25
LDB2O43679 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
LDB2O43679 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LDB2O43679 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.62■□□□□ 0.25
LDB2O43679 AC020765.3-201ENST00000613051 740 ntBASIC16.62■□□□□ 0.25
LDB2O43679 AC023511.2-201ENST00000618803 211 ntBASIC16.62■□□□□ 0.25
LDB2O43679 AL513190.1-201ENST00000621254 727 ntBASIC16.62■□□□□ 0.25
LDB2O43679 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.62■□□□□ 0.25
LDB2O43679 AC092865.6-201ENST00000642101 219 ntBASIC16.62■□□□□ 0.25
LDB2O43679 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDB2O43679 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.62■□□□□ 0.25
LDB2O43679 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB2O43679 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.62■□□□□ 0.25
LDB2O43679 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LDB2O43679 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.62■□□□□ 0.25
LDB2O43679 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB2O43679 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
LDB2O43679 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB2O43679 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB2O43679 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LDB2O43679 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LDB2O43679 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LDB2O43679 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LDB2O43679 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 AC092919.2-201ENST00000623631 1645 ntBASIC16.61■□□□□ 0.25
LDB2O43679 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.61■□□□□ 0.25
LDB2O43679 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.61■□□□□ 0.25
LDB2O43679 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.61■□□□□ 0.25
LDB2O43679 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.61■□□□□ 0.25
LDB2O43679 RNA5SP416-201ENST00000516838 111 ntBASIC16.61■□□□□ 0.25
LDB2O43679 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.61■□□□□ 0.25
LDB2O43679 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 PDPK2P-202ENST00000562415 1191 ntBASIC16.61■□□□□ 0.25
LDB2O43679 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.61■□□□□ 0.25
LDB2O43679 AL671883.3-201ENST00000603274 991 ntBASIC16.61■□□□□ 0.25
LDB2O43679 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.61■□□□□ 0.25
LDB2O43679 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.61■□□□□ 0.25
LDB2O43679 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.61■□□□□ 0.25
LDB2O43679 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LDB2O43679 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.61■□□□□ 0.25
LDB2O43679 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.61■□□□□ 0.25
LDB2O43679 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB2O43679 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LDB2O43679 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.61■□□□□ 0.25
LDB2O43679 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.6■□□□□ 0.25
LDB2O43679 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 DOC2GP-204ENST00000639052 2548 ntBASIC16.6■□□□□ 0.25
LDB2O43679 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LDB2O43679 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.6■□□□□ 0.25
LDB2O43679 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 AC092474.2-201ENST00000424288 719 ntBASIC16.6■□□□□ 0.25
LDB2O43679 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.6■□□□□ 0.25
LDB2O43679 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
LDB2O43679 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LDB2O43679 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
LDB2O43679 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.6■□□□□ 0.25
LDB2O43679 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB2O43679 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms