Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.25■□□□□ 0.19
HDAC3O15379 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.25■□□□□ 0.19
HDAC3O15379 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.25■□□□□ 0.19
HDAC3O15379 MPDU1-223ENST00000582151 728 ntBASIC16.25■□□□□ 0.19
HDAC3O15379 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HDAC3O15379 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HDAC3O15379 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.25■□□□□ 0.19
HDAC3O15379 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.25■□□□□ 0.19
HDAC3O15379 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
HDAC3O15379 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HDAC3O15379 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HDAC3O15379 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HDAC3O15379 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HDAC3O15379 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HDAC3O15379 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.24■□□□□ 0.19
HDAC3O15379 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HDAC3O15379 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
HDAC3O15379 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
HDAC3O15379 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 PRYP5-201ENST00000451909 266 ntBASIC16.24■□□□□ 0.19
HDAC3O15379 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.24■□□□□ 0.19
HDAC3O15379 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.24■□□□□ 0.19
HDAC3O15379 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HDAC3O15379 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.24■□□□□ 0.19
HDAC3O15379 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HDAC3O15379 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.24■□□□□ 0.19
HDAC3O15379 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.24■□□□□ 0.19
HDAC3O15379 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HDAC3O15379 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDAC3O15379 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.24■□□□□ 0.19
HDAC3O15379 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HDAC3O15379 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.23■□□□□ 0.19
HDAC3O15379 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 PCGF3-213ENST00000620529 1899 ntBASIC16.23■□□□□ 0.19
HDAC3O15379 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 LINC01144-201ENST00000626198 1710 ntBASIC16.23■□□□□ 0.19
HDAC3O15379 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
HDAC3O15379 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.23■□□□□ 0.19
HDAC3O15379 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 AP002383.4-201ENST00000442518 975 ntBASIC16.23■□□□□ 0.19
HDAC3O15379 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.23■□□□□ 0.19
HDAC3O15379 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.23■□□□□ 0.19
HDAC3O15379 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.23■□□□□ 0.19
HDAC3O15379 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HDAC3O15379 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.23■□□□□ 0.19
HDAC3O15379 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.23■□□□□ 0.19
HDAC3O15379 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.23■□□□□ 0.19
HDAC3O15379 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDAC3O15379 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms