Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 AL139400.1-201ENST00000366220 510 ntBASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 AC026120.1-201ENST00000611536 926 ntBASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 AL139327.4-201ENST00000612362 153 ntBASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TMX2-CTNND1H3BSU7 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
TMX2-CTNND1H3BSU7 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
TMX2-CTNND1H3BSU7 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.39■□□□□ 0.22
TMX2-CTNND1H3BSU7 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 AL671277.1-201ENST00000429656 993 ntBASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 FAM86GP-201ENST00000448322 971 ntBASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC087163.2-201ENST00000457299 853 ntBASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 SPCS2P1-201ENST00000561636 679 ntBASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 AL096865.1-201ENST00000606796 927 ntBASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 LINC00628-201ENST00000628516 1289 ntBASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.39■□□□□ 0.21
TMX2-CTNND1H3BSU7 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC140658.5-201ENST00000438532 169 ntBASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 SPDYE11-202ENST00000450699 704 ntBASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 RN7SL589P-201ENST00000481268 310 ntBASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms