Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS33AQ96AX1 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS33AQ96AX1 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS33AQ96AX1 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS33AQ96AX1 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 AC074051.2-201ENST00000565115 352 ntBASIC16.08■□□□□ 0.16
VPS33AQ96AX1 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 AC116407.4-201ENST00000623319 1061 ntBASIC16.08■□□□□ 0.16
VPS33AQ96AX1 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 AL671710.1-201ENST00000610245 2349 ntBASIC16.08■□□□□ 0.16
VPS33AQ96AX1 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS33AQ96AX1 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 AL596087.1-201ENST00000400979 1969 ntBASIC16.07■□□□□ 0.16
VPS33AQ96AX1 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 AC013467.2-201ENST00000605472 835 ntBASIC16.07■□□□□ 0.16
VPS33AQ96AX1 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 FLJ16779-201ENST00000612722 7638 ntBASIC16.07■□□□□ 0.16
VPS33AQ96AX1 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS33AQ96AX1 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 AL590787.1-201ENST00000568856 1315 ntBASIC16.06■□□□□ 0.16
VPS33AQ96AX1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 TERC-201ENST00000602385 541 ntBASIC16.06■□□□□ 0.16
VPS33AQ96AX1 AC073592.4-201ENST00000623827 446 ntBASIC16.06■□□□□ 0.16
VPS33AQ96AX1 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS33AQ96AX1 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.06■□□□□ 0.16
VPS33AQ96AX1 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms