Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 SPDYE22P-201ENST00000582158 798 ntBASIC16.65■□□□□ 0.26
HMGB4Q8WW32 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 TUBB8P12-201ENST00000308911 1335 ntBASIC16.65■□□□□ 0.26
HMGB4Q8WW32 TUBB7P-202ENST00000428444 1305 ntBASIC16.65■□□□□ 0.26
HMGB4Q8WW32 TUBB8P7-204ENST00000567960 1332 ntBASIC16.65■□□□□ 0.26
HMGB4Q8WW32 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.64■□□□□ 0.26
HMGB4Q8WW32 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HMGB4Q8WW32 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 AL671710.1-201ENST00000610245 2349 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 AL596325.1-201ENST00000563991 1082 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 AL589739.1-201ENST00000607720 493 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 SPTSSB-204ENST00000617024 1292 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 OR6D1P-203ENST00000641209 4860 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 LINC02012-201ENST00000608206 1725 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 CROCCP2-202ENST00000412962 2773 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 AL035456.1-201ENST00000456064 1369 ntBASIC16.64■□□□□ 0.25
HMGB4Q8WW32 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HMGB4Q8WW32 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 CETN4P-206ENST00000642099 2168 ntBASIC16.63■□□□□ 0.25
HMGB4Q8WW32 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 RNA5SP410-201ENST00000516285 106 ntBASIC16.63■□□□□ 0.25
HMGB4Q8WW32 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms