Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 AL080243.2-201ENST00000418783 582 ntBASIC20.56■□□□□ 0.88
SYNE4Q8N205 AL353705.2-201ENST00000428243 662 ntBASIC20.56■□□□□ 0.88
SYNE4Q8N205 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 AC093724.1-201ENST00000448659 1027 ntBASIC20.56■□□□□ 0.88
SYNE4Q8N205 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 AL035456.1-201ENST00000456064 1369 ntBASIC20.56■□□□□ 0.88
SYNE4Q8N205 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 AC087499.5-201ENST00000452760 1342 ntBASIC20.55■□□□□ 0.88
SYNE4Q8N205 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 AL079307.3-201ENST00000556114 283 ntBASIC20.55■□□□□ 0.88
SYNE4Q8N205 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 TP53TG3HP-202ENST00000569755 579 ntBASIC20.55■□□□□ 0.88
SYNE4Q8N205 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 RNF216P1-203ENST00000404404 2427 ntBASIC20.55■□□□□ 0.88
SYNE4Q8N205 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE4Q8N205 CETN4P-206ENST00000642099 2168 ntBASIC20.55■□□□□ 0.88
SYNE4Q8N205 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SYNE4Q8N205 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE4Q8N205 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE4Q8N205 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE4Q8N205 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 GGT4P-201ENST00000623672 1708 ntBASIC20.54■□□□□ 0.88
SYNE4Q8N205 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE4Q8N205 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 GNAQP1-201ENST00000444815 1067 ntBASIC20.54■□□□□ 0.88
SYNE4Q8N205 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE4Q8N205 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.54■□□□□ 0.88
SYNE4Q8N205 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 AC005915.1-201ENST00000624912 2018 ntBASIC20.54■□□□□ 0.88
SYNE4Q8N205 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE4Q8N205 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE4Q8N205 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE4Q8N205 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SYNE4Q8N205 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
SYNE4Q8N205 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE4Q8N205 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms