Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 AC128676.1-201ENST00000454392 318 ntBASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 FAM197Y4-202ENST00000622692 608 ntBASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 AC027601.5-201ENST00000624065 2482 ntBASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 KRT18P29-201ENST00000397031 1267 ntBASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 C1QBPP2-201ENST00000528754 825 ntBASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 LINC01451-201ENST00000623792 534 ntBASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28AQ8IWP9 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms