Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
RFX3P48380 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 TUBB8P12-201ENST00000308911 1335 ntBASIC15.72■□□□□ 0.11
RFX3P48380 TUBB7P-202ENST00000428444 1305 ntBASIC15.72■□□□□ 0.11
RFX3P48380 TUBB8P7-204ENST00000567960 1332 ntBASIC15.72■□□□□ 0.11
RFX3P48380 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.72■□□□□ 0.11
RFX3P48380 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.72■□□□□ 0.11
RFX3P48380 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.72■□□□□ 0.11
RFX3P48380 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.72■□□□□ 0.11
RFX3P48380 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.72■□□□□ 0.11
RFX3P48380 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 AP002414.1-201ENST00000391405 1147 ntBASIC15.72■□□□□ 0.11
RFX3P48380 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.72■□□□□ 0.11
RFX3P48380 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.72■□□□□ 0.11
RFX3P48380 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.72■□□□□ 0.11
RFX3P48380 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.72■□□□□ 0.11
RFX3P48380 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.72■□□□□ 0.11
RFX3P48380 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.72■□□□□ 0.11
RFX3P48380 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.72■□□□□ 0.11
RFX3P48380 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.72■□□□□ 0.11
RFX3P48380 MIR7706-201ENST00000613747 67 ntBASIC15.72■□□□□ 0.11
RFX3P48380 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.72■□□□□ 0.11
RFX3P48380 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.72■□□□□ 0.11
RFX3P48380 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
RFX3P48380 AL805961.1-202ENST00000641562 540 ntBASIC15.72■□□□□ 0.11
RFX3P48380 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
RFX3P48380 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
RFX3P48380 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFX3P48380 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
RFX3P48380 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
RFX3P48380 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.71■□□□□ 0.11
RFX3P48380 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.71■□□□□ 0.11
RFX3P48380 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
RFX3P48380 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.71■□□□□ 0.11
RFX3P48380 AC073621.1-201ENST00000392730 636 ntBASIC15.71■□□□□ 0.11
RFX3P48380 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 KRT18P27-201ENST00000427733 1299 ntBASIC15.71■□□□□ 0.11
RFX3P48380 AC087163.2-201ENST00000457299 853 ntBASIC15.71■□□□□ 0.11
RFX3P48380 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.71■□□□□ 0.11
RFX3P48380 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.71■□□□□ 0.11
RFX3P48380 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.71■□□□□ 0.11
RFX3P48380 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.71■□□□□ 0.11
RFX3P48380 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.71■□□□□ 0.11
RFX3P48380 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
RFX3P48380 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 AGGF1P2-201ENST00000426656 2106 ntBASIC15.71■□□□□ 0.11
RFX3P48380 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RFX3P48380 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
RFX3P48380 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
RFX3P48380 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
RFX3P48380 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
RFX3P48380 AC078925.2-201ENST00000624013 1973 ntBASIC15.71■□□□□ 0.1
RFX3P48380 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
RFX3P48380 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
RFX3P48380 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.1
RFX3P48380 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.1
RFX3P48380 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.1
RFX3P48380 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
RFX3P48380 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
RFX3P48380 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
RFX3P48380 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.7■□□□□ 0.1
RFX3P48380 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms