Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.86■□□□□ 0.77
BRCA1P38398 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 BICD1-207ENST00000551848 1962 ntBASIC19.86■□□□□ 0.77
BRCA1P38398 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.86■□□□□ 0.77
BRCA1P38398 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 AC009113.1-201ENST00000570267 2443 ntBASIC19.85■□□□□ 0.77
BRCA1P38398 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.85■□□□□ 0.77
BRCA1P38398 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.85■□□□□ 0.77
BRCA1P38398 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
BRCA1P38398 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.85■□□□□ 0.77
BRCA1P38398 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
BRCA1P38398 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.85■□□□□ 0.77
BRCA1P38398 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.85■□□□□ 0.77
BRCA1P38398 CNN2P8-201ENST00000421872 913 ntBASIC19.85■□□□□ 0.77
BRCA1P38398 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.85■□□□□ 0.77
BRCA1P38398 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC19.85■□□□□ 0.77
BRCA1P38398 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.85■□□□□ 0.77
BRCA1P38398 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.85■□□□□ 0.77
BRCA1P38398 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
BRCA1P38398 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC19.85■□□□□ 0.77
BRCA1P38398 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.85■□□□□ 0.77
BRCA1P38398 GRN-214ENST00000589265 1632 ntTSL 5 BASIC19.85■□□□□ 0.77
BRCA1P38398 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
BRCA1P38398 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.84■□□□□ 0.77
BRCA1P38398 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.84■□□□□ 0.77
BRCA1P38398 FO393414.2-201ENST00000405153 598 ntBASIC19.84■□□□□ 0.77
BRCA1P38398 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.84■□□□□ 0.77
BRCA1P38398 AC016694.1-201ENST00000434179 700 ntBASIC19.84■□□□□ 0.77
BRCA1P38398 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.84■□□□□ 0.77
BRCA1P38398 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC19.84■□□□□ 0.77
BRCA1P38398 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
BRCA1P38398 MIR6727-201ENST00000620702 65 ntBASIC19.84■□□□□ 0.77
BRCA1P38398 AL139011.1-202ENST00000642063 584 ntBASIC19.84■□□□□ 0.77
BRCA1P38398 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
BRCA1P38398 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.84■□□□□ 0.77
BRCA1P38398 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 FAM86LP-201ENST00000478302 853 ntBASIC19.84■□□□□ 0.77
BRCA1P38398 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.84■□□□□ 0.77
BRCA1P38398 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.84■□□□□ 0.77
BRCA1P38398 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.84■□□□□ 0.77
BRCA1P38398 MIR4321-201ENST00000592276 80 ntBASIC19.84■□□□□ 0.77
BRCA1P38398 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.84■□□□□ 0.77
BRCA1P38398 AL008638.5-201ENST00000623814 1298 ntBASIC19.84■□□□□ 0.77
BRCA1P38398 AC005252.2-201ENST00000624630 1141 ntBASIC19.84■□□□□ 0.77
BRCA1P38398 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRCA1P38398 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BRCA1P38398 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRCA1P38398 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BRCA1P38398 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
BRCA1P38398 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRCA1P38398 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.83■□□□□ 0.76
BRCA1P38398 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
BRCA1P38398 BAATP1-201ENST00000412284 1225 ntBASIC19.83■□□□□ 0.76
BRCA1P38398 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.83■□□□□ 0.76
BRCA1P38398 AC104306.2-201ENST00000451877 341 ntBASIC19.83■□□□□ 0.76
BRCA1P38398 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.83■□□□□ 0.76
BRCA1P38398 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.83■□□□□ 0.76
BRCA1P38398 TIMM17BP1-201ENST00000545713 516 ntBASIC19.83■□□□□ 0.76
BRCA1P38398 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.83■□□□□ 0.76
BRCA1P38398 AC016629.1-201ENST00000596579 586 ntBASIC19.83■□□□□ 0.76
BRCA1P38398 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.83■□□□□ 0.76
BRCA1P38398 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
BRCA1P38398 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
BRCA1P38398 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.83■□□□□ 0.76
BRCA1P38398 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
BRCA1P38398 GPAA1P2-202ENST00000606848 1787 ntBASIC19.83■□□□□ 0.76
BRCA1P38398 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
BRCA1P38398 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
BRCA1P38398 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.82■□□□□ 0.76
BRCA1P38398 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms