Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DOAP06340 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DOAP06340 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 AC241585.1-201ENST00000433527 519 ntBASIC19.54■□□□□ 0.72
HLA-DOAP06340 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DOAP06340 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 AC027369.6-201ENST00000525520 931 ntBASIC19.54■□□□□ 0.72
HLA-DOAP06340 AC138761.1-201ENST00000584393 385 ntBASIC19.54■□□□□ 0.72
HLA-DOAP06340 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 AC020765.3-201ENST00000613051 740 ntBASIC19.54■□□□□ 0.72
HLA-DOAP06340 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DOAP06340 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DOAP06340 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DOAP06340 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HLA-DOAP06340 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DOAP06340 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DOAP06340 AL512652.2-201ENST00000625156 1716 ntBASIC19.54■□□□□ 0.72
HLA-DOAP06340 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 TSPY16P-201ENST00000449843 468 ntBASIC19.53■□□□□ 0.72
HLA-DOAP06340 RNA5SP410-201ENST00000516285 106 ntBASIC19.53■□□□□ 0.72
HLA-DOAP06340 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 AL035456.1-201ENST00000456064 1369 ntBASIC19.53■□□□□ 0.72
HLA-DOAP06340 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.53■□□□□ 0.72
HLA-DOAP06340 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DOAP06340 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 COX20P2-201ENST00000452636 358 ntBASIC19.52■□□□□ 0.72
HLA-DOAP06340 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.52■□□□□ 0.72
HLA-DOAP06340 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DOAP06340 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.52■□□□□ 0.72
HLA-DOAP06340 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HLA-DOAP06340 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HLA-DOAP06340 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
HLA-DOAP06340 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
HLA-DOAP06340 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
HLA-DOAP06340 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms