Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 POU5F1P6-201ENST00000466990 990 ntBASIC19.25■□□□□ 0.67
CTDNEP1O95476 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 KRT19P2-202ENST00000557173 1012 ntBASIC19.25■□□□□ 0.67
CTDNEP1O95476 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 AL009183.1-201ENST00000603760 355 ntBASIC19.25■□□□□ 0.67
CTDNEP1O95476 AC020765.3-201ENST00000613051 740 ntBASIC19.25■□□□□ 0.67
CTDNEP1O95476 BX640515.1-201ENST00000617215 977 ntBASIC19.25■□□□□ 0.67
CTDNEP1O95476 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 AC026396.1-201ENST00000419388 421 ntBASIC19.24■□□□□ 0.67
CTDNEP1O95476 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 AC023141.13-201ENST00000604991 943 ntBASIC19.24■□□□□ 0.67
CTDNEP1O95476 AL513190.1-201ENST00000621254 727 ntBASIC19.24■□□□□ 0.67
CTDNEP1O95476 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.24■□□□□ 0.67
CTDNEP1O95476 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 BCAR1-209ENST00000546196 1340 ntBASIC19.24■□□□□ 0.67
CTDNEP1O95476 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTDNEP1O95476 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 AC024909.3-201ENST00000611513 2257 ntBASIC19.23■□□□□ 0.67
CTDNEP1O95476 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 AC092474.2-201ENST00000424288 719 ntBASIC19.23■□□□□ 0.67
CTDNEP1O95476 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 AC106730.1-201ENST00000566722 1090 ntBASIC19.23■□□□□ 0.67
CTDNEP1O95476 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 AC021097.1-201ENST00000607902 574 ntBASIC19.23■□□□□ 0.67
CTDNEP1O95476 AC092865.6-201ENST00000642101 219 ntBASIC19.23■□□□□ 0.67
CTDNEP1O95476 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 AC007950.2-201ENST00000615045 2347 ntBASIC19.23■□□□□ 0.67
CTDNEP1O95476 AL365203.3-201ENST00000609742 2057 ntBASIC19.23■□□□□ 0.67
CTDNEP1O95476 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.23■□□□□ 0.67
CTDNEP1O95476 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTDNEP1O95476 AC005622.1-201ENST00000636801 1703 ntBASIC19.22■□□□□ 0.67
CTDNEP1O95476 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 AL603832.2-201ENST00000566195 2125 ntBASIC19.22■□□□□ 0.67
CTDNEP1O95476 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTDNEP1O95476 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDNEP1O95476 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 AC109635.5-201ENST00000533593 962 ntBASIC19.22■□□□□ 0.67
CTDNEP1O95476 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms