Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PROM1O43490 MIR4515-201ENST00000584082 81 ntBASIC15.86■□□□□ 0.13
PROM1O43490 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.86■□□□□ 0.13
PROM1O43490 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.86■□□□□ 0.13
PROM1O43490 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PROM1O43490 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PROM1O43490 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PROM1O43490 AL671710.1-201ENST00000610245 2349 ntBASIC15.86■□□□□ 0.13
PROM1O43490 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PROM1O43490 UBALD1-205ENST00000590891 2641 ntBASIC15.86■□□□□ 0.13
PROM1O43490 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.86■□□□□ 0.13
PROM1O43490 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PROM1O43490 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.86■□□□□ 0.13
PROM1O43490 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.86■□□□□ 0.13
PROM1O43490 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PROM1O43490 KRT8P39-201ENST00000396270 1433 ntBASIC15.85■□□□□ 0.13
PROM1O43490 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PROM1O43490 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PROM1O43490 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PROM1O43490 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PROM1O43490 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
PROM1O43490 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
PROM1O43490 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.85■□□□□ 0.13
PROM1O43490 RHOQP3-201ENST00000437982 621 ntBASIC15.85■□□□□ 0.13
PROM1O43490 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.85■□□□□ 0.13
PROM1O43490 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.85■□□□□ 0.13
PROM1O43490 SLC25A1P1-201ENST00000528351 927 ntBASIC15.85■□□□□ 0.13
PROM1O43490 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.85■□□□□ 0.13
PROM1O43490 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.85■□□□□ 0.13
PROM1O43490 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.85■□□□□ 0.13
PROM1O43490 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.85■□□□□ 0.13
PROM1O43490 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
PROM1O43490 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 ZNF259P1-201ENST00000407656 1365 ntBASIC15.85■□□□□ 0.13
PROM1O43490 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.85■□□□□ 0.13
PROM1O43490 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.85■□□□□ 0.13
PROM1O43490 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
PROM1O43490 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PROM1O43490 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PROM1O43490 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 AL596257.1-201ENST00000641463 2694 ntBASIC15.84■□□□□ 0.13
PROM1O43490 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 DOC2GP-204ENST00000639052 2548 ntBASIC15.84■□□□□ 0.13
PROM1O43490 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
PROM1O43490 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 AL513480.1-201ENST00000451731 511 ntBASIC15.84■□□□□ 0.13
PROM1O43490 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.84■□□□□ 0.13
PROM1O43490 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 AC106730.1-201ENST00000566722 1090 ntBASIC15.84■□□□□ 0.13
PROM1O43490 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.84■□□□□ 0.13
PROM1O43490 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.84■□□□□ 0.13
PROM1O43490 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.84■□□□□ 0.13
PROM1O43490 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PROM1O43490 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms