Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 RNF24-201ENST00000336095 7453 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 AC008764.7-201ENST00000593779 1081 ntBASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 TPRG1LP1-201ENST00000598702 760 ntBASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 DYSF-208ENST00000410020 6657 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 ACE-203ENST00000413513 2237 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 MAST4-203ENST00000403666 7586 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
CHKB-CPT1BH3BT56 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 RNF217-210ENST00000521654 11325 ntAPPRIS P2 TSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 PCDHA5-203ENST00000614258 4248 ntBASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 FREM3-201ENST00000329798 6729 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 MTURN-203ENST00000409688 843 ntTSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 AL390719.1-204ENST00000412397 1219 ntBASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 TSPY23P-201ENST00000440136 739 ntBASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 TPO-203ENST00000346956 2923 ntTSL 5 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 AC011481.3-201ENST00000623895 5594 ntBASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
CHKB-CPT1BH3BT56 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms